Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3316

Experiment: Parabanic Acid (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3314 and Dshi_3315 are separated by 386 nucleotidesDshi_3315 and Dshi_3316 are separated by 14 nucleotidesDshi_3316 and Dshi_3317 are separated by 224 nucleotides Dshi_3314: Dshi_3314 - hypothetical protein (RefSeq), at 3,477,352 to 3,477,885 _3314 Dshi_3315: Dshi_3315 - hypothetical protein (RefSeq), at 3,478,272 to 3,478,583 _3315 Dshi_3316: Dshi_3316 - phosphoserine phosphatase SerB (RefSeq), at 3,478,598 to 3,479,476 _3316 Dshi_3317: Dshi_3317 - phosphoserine aminotransferase (RefSeq), at 3,479,701 to 3,480,855 _3317 Position (kb) 3478 3479 3480Strain fitness (log2 ratio) -2 -1 0 1 2at 3477.913 kb on + strandat 3477.922 kb on - strandat 3478.019 kb on - strandat 3478.020 kb on - strandat 3478.067 kb on - strandat 3478.156 kb on - strandat 3478.156 kb on - strandat 3478.193 kb on + strandat 3478.302 kb on - strandat 3478.390 kb on + strand, within Dshi_3315at 3478.405 kb on + strand, within Dshi_3315at 3478.411 kb on + strand, within Dshi_3315at 3478.421 kb on + strand, within Dshi_3315at 3478.530 kb on - strand, within Dshi_3315at 3478.530 kb on - strand, within Dshi_3315at 3478.551 kb on - strand, within Dshi_3315at 3479.558 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Parabanic Acid (N)
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3,477,913 + -0.3
3,477,922 - +1.1
3,478,019 - -2.3
3,478,020 - -0.6
3,478,067 - +0.2
3,478,156 - -0.1
3,478,156 - +0.3
3,478,193 + -0.3
3,478,302 - -0.3
3,478,390 + Dshi_3315 0.38 +0.9
3,478,405 + Dshi_3315 0.43 +0.8
3,478,411 + Dshi_3315 0.45 +0.3
3,478,421 + Dshi_3315 0.48 -0.2
3,478,530 - Dshi_3315 0.83 +0.2
3,478,530 - Dshi_3315 0.83 +0.8
3,478,551 - Dshi_3315 0.89 +1.8
3,479,558 + +0.1

Or see this region's nucleotide sequence