Experiment: Parabanic Acid (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0796 and Dshi_0797 overlap by 4 nucleotides Dshi_0797 and Dshi_0798 overlap by 11 nucleotides Dshi_0798 and Dshi_0799 are separated by 266 nucleotides Dshi_0799 and Dshi_0800 are separated by 162 nucleotides
Dshi_0796: Dshi_0796 - ornithine carbamoyltransferase (RefSeq), at 802,986 to 803,912
_0796
Dshi_0797: Dshi_0797 - GCN5-related N-acetyltransferase (RefSeq), at 803,909 to 804,442
_0797
Dshi_0798: Dshi_0798 - acetylornithine and succinylornithine aminotransferase (RefSeq), at 804,432 to 805,613
_0798
Dshi_0799: Dshi_0799 - putative DNA-binding protein (RefSeq), at 805,880 to 806,218
_0799
Dshi_0800: Dshi_0800 - transcriptional regulator, IclR family (RefSeq), at 806,381 to 807,163
_0800
Position (kb) 804
805
806 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 803.502 kb on - strand, within Dshi_0796 at 803.601 kb on + strand, within Dshi_0796 at 803.781 kb on + strand, within Dshi_0796 at 803.809 kb on + strand, within Dshi_0796 at 803.874 kb on + strand at 803.953 kb on - strand at 804.048 kb on + strand, within Dshi_0797 at 804.095 kb on - strand, within Dshi_0797 at 804.220 kb on - strand, within Dshi_0797 at 804.447 kb on - strand at 805.630 kb on + strand at 805.641 kb on + strand at 805.641 kb on + strand at 805.648 kb on + strand at 805.799 kb on + strand at 805.848 kb on - strand at 805.905 kb on + strand at 805.957 kb on - strand, within Dshi_0799 at 805.993 kb on - strand, within Dshi_0799 at 806.026 kb on + strand, within Dshi_0799 at 806.034 kb on - strand, within Dshi_0799 at 806.070 kb on + strand, within Dshi_0799 at 806.125 kb on - strand, within Dshi_0799 at 806.146 kb on + strand, within Dshi_0799 at 806.184 kb on + strand, within Dshi_0799 at 806.386 kb on - strand at 806.412 kb on - strand at 806.506 kb on + strand, within Dshi_0800
Per-strain Table
Position Strand Gene LocusTag Fraction Parabanic Acid (N) remove 803,502 - Dshi_0796 0.56 -3.9 803,601 + Dshi_0796 0.66 -1.5 803,781 + Dshi_0796 0.86 -3.5 803,809 + Dshi_0796 0.89 -5.2 803,874 + -2.8 803,953 - +1.3 804,048 + Dshi_0797 0.26 -0.3 804,095 - Dshi_0797 0.35 -0.8 804,220 - Dshi_0797 0.58 -1.1 804,447 - -0.3 805,630 + -0.2 805,641 + -0.5 805,641 + -0.6 805,648 + -1.0 805,799 + -0.5 805,848 - -0.4 805,905 + -0.7 805,957 - Dshi_0799 0.23 -0.0 805,993 - Dshi_0799 0.33 -0.2 806,026 + Dshi_0799 0.43 -0.1 806,034 - Dshi_0799 0.45 -0.9 806,070 + Dshi_0799 0.56 -0.3 806,125 - Dshi_0799 0.72 -0.3 806,146 + Dshi_0799 0.78 -0.4 806,184 + Dshi_0799 0.90 +0.3 806,386 - +0.1 806,412 - +0.4 806,506 + Dshi_0800 0.16 -0.7
Or see this region's nucleotide sequence