Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03071 and SMc03072 are separated by 125 nucleotides SMc03072 and SMc03057 overlap by 1 nucleotides SMc03057 and SMc03058 are separated by 34 nucleotides
SMc03071: SMc03071 - hypothetical protein, at 751,953 to 752,507
SMc03071
SMc03072: SMc03072 - hypothetical protein, at 752,633 to 753,001
SMc03072
SMc03057: SMc03057 - hypothetical protein, at 753,001 to 753,567
SMc03057
SMc03058: SMc03058 - glycosyltransferase, at 753,602 to 754,591
SMc03058
Position (kb) 753
754 Strain fitness (log2 ratio) -2
-1
0
1
2 at 752.368 kb on + strand, within SMc03071 at 752.448 kb on + strand, within SMc03071 at 752.449 kb on - strand, within SMc03071 at 752.544 kb on + strand at 752.545 kb on - strand at 752.552 kb on + strand at 752.552 kb on + strand at 752.552 kb on + strand at 752.553 kb on - strand at 752.619 kb on + strand at 752.619 kb on + strand at 752.632 kb on + strand at 752.777 kb on + strand, within SMc03072 at 752.778 kb on - strand, within SMc03072 at 752.967 kb on - strand at 752.967 kb on - strand at 752.967 kb on - strand at 752.967 kb on - strand at 752.968 kb on + strand at 752.968 kb on + strand at 753.058 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.130 kb on + strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.131 kb on - strand, within SMc03057 at 753.149 kb on + strand, within SMc03057 at 753.187 kb on + strand, within SMc03057 at 753.188 kb on - strand, within SMc03057 at 753.188 kb on - strand, within SMc03057 at 753.229 kb on - strand, within SMc03057 at 753.277 kb on + strand, within SMc03057 at 753.277 kb on + strand, within SMc03057 at 753.278 kb on - strand, within SMc03057 at 753.424 kb on + strand, within SMc03057 at 753.425 kb on - strand, within SMc03057 at 753.425 kb on - strand, within SMc03057 at 753.475 kb on + strand, within SMc03057 at 753.644 kb on + strand at 753.758 kb on + strand, within SMc03058 at 753.758 kb on + strand, within SMc03058 at 753.759 kb on - strand, within SMc03058 at 753.972 kb on - strand, within SMc03058 at 753.983 kb on - strand, within SMc03058 at 754.060 kb on - strand, within SMc03058 at 754.230 kb on - strand, within SMc03058 at 754.242 kb on + strand, within SMc03058 at 754.243 kb on - strand, within SMc03058 at 754.243 kb on - strand, within SMc03058
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 752,368 + SMc03071 0.75 -0.0 752,448 + SMc03071 0.89 +1.0 752,449 - SMc03071 0.89 -0.8 752,544 + -1.3 752,545 - +0.2 752,552 + -1.2 752,552 + -0.5 752,552 + +0.0 752,553 - -0.2 752,619 + +0.3 752,619 + +0.3 752,632 + -0.5 752,777 + SMc03072 0.39 -1.3 752,778 - SMc03072 0.39 -1.2 752,967 - -0.0 752,967 - -0.0 752,967 - -0.4 752,967 - +0.0 752,968 + -0.2 752,968 + -0.7 753,058 + SMc03057 0.10 +0.6 753,130 + SMc03057 0.23 +0.3 753,130 + SMc03057 0.23 -0.3 753,130 + SMc03057 0.23 +0.6 753,130 + SMc03057 0.23 +0.9 753,130 + SMc03057 0.23 +0.4 753,131 - SMc03057 0.23 +0.6 753,131 - SMc03057 0.23 -1.3 753,131 - SMc03057 0.23 +1.2 753,131 - SMc03057 0.23 +0.4 753,149 + SMc03057 0.26 +0.2 753,187 + SMc03057 0.33 -0.1 753,188 - SMc03057 0.33 -0.1 753,188 - SMc03057 0.33 +1.8 753,229 - SMc03057 0.40 +0.1 753,277 + SMc03057 0.49 +1.2 753,277 + SMc03057 0.49 +0.4 753,278 - SMc03057 0.49 -0.3 753,424 + SMc03057 0.75 -0.2 753,425 - SMc03057 0.75 +0.9 753,425 - SMc03057 0.75 -0.4 753,475 + SMc03057 0.84 +0.8 753,644 + +0.3 753,758 + SMc03058 0.16 +1.2 753,758 + SMc03058 0.16 -1.8 753,759 - SMc03058 0.16 -0.3 753,972 - SMc03058 0.37 -0.7 753,983 - SMc03058 0.38 +0.0 754,060 - SMc03058 0.46 -0.7 754,230 - SMc03058 0.63 -0.3 754,242 + SMc03058 0.65 -0.3 754,243 - SMc03058 0.65 -2.6 754,243 - SMc03058 0.65 -1.4
Or see this region's nucleotide sequence