Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03030 and SMc03031 are separated by 21 nucleotides SMc03031 and SMc03032 overlap by 4 nucleotides SMc03032 and SMc03033 overlap by 4 nucleotides SMc03033 and SMc03034 overlap by 4 nucleotides
SMc03030: SMc03030 - flagellar basal body rod protein FlgG, at 726,091 to 726,879
SMc03030
SMc03031: SMc03031 - flagellar basal body P-ring biosynthesis protein FlgA, at 726,901 to 727,407
SMc03031
SMc03032: SMc03032 - flagellar basal body P-ring protein, at 727,404 to 728,519
SMc03032
SMc03033: SMc03033 - hypothetical protein, at 728,516 to 729,055
SMc03033
SMc03034: SMc03034 - flagellar basal body L-ring protein, at 729,052 to 729,762
SMc03034
Position (kb) 727
728
729 Strain fitness (log2 ratio) -2
-1
0
1
2 at 726.493 kb on - strand, within SMc03030 at 726.493 kb on - strand, within SMc03030 at 726.742 kb on + strand, within SMc03030 at 726.743 kb on - strand, within SMc03030 at 726.746 kb on + strand, within SMc03030 at 726.780 kb on + strand, within SMc03030 at 726.781 kb on - strand, within SMc03030 at 726.808 kb on + strand at 726.808 kb on + strand at 727.055 kb on - strand, within SMc03031 at 727.220 kb on - strand, within SMc03031 at 727.418 kb on + strand at 727.821 kb on + strand, within SMc03032 at 727.822 kb on - strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.218 kb on + strand, within SMc03032 at 728.219 kb on - strand, within SMc03032 at 728.219 kb on - strand, within SMc03032 at 728.256 kb on + strand, within SMc03032 at 728.257 kb on - strand, within SMc03032 at 728.334 kb on + strand at 728.708 kb on + strand, within SMc03033 at 728.708 kb on + strand, within SMc03033 at 728.709 kb on - strand, within SMc03033 at 728.709 kb on - strand, within SMc03033 at 728.806 kb on + strand, within SMc03033 at 728.807 kb on - strand, within SMc03033 at 728.858 kb on + strand, within SMc03033 at 728.858 kb on + strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.286 kb on - strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.297 kb on - strand, within SMc03034 at 729.297 kb on - strand, within SMc03034
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 726,493 - SMc03030 0.51 +0.0 726,493 - SMc03030 0.51 +1.2 726,742 + SMc03030 0.83 +0.1 726,743 - SMc03030 0.83 +0.0 726,746 + SMc03030 0.83 -0.8 726,780 + SMc03030 0.87 +0.6 726,781 - SMc03030 0.87 -0.0 726,808 + +1.2 726,808 + +0.2 727,055 - SMc03031 0.30 -0.5 727,220 - SMc03031 0.63 -0.2 727,418 + -0.2 727,821 + SMc03032 0.37 -0.2 727,822 - SMc03032 0.37 +0.2 728,040 + SMc03032 0.57 +1.4 728,040 + SMc03032 0.57 +2.0 728,040 + SMc03032 0.57 +1.9 728,040 + SMc03032 0.57 -0.2 728,218 + SMc03032 0.73 +0.2 728,219 - SMc03032 0.73 -0.0 728,219 - SMc03032 0.73 +1.0 728,256 + SMc03032 0.76 +0.4 728,257 - SMc03032 0.76 -0.2 728,334 + -0.7 728,708 + SMc03033 0.36 -0.3 728,708 + SMc03033 0.36 +0.3 728,709 - SMc03033 0.36 -0.5 728,709 - SMc03033 0.36 -0.4 728,806 + SMc03033 0.54 -0.2 728,807 - SMc03033 0.54 +0.2 728,858 + SMc03033 0.63 +0.4 728,858 + SMc03033 0.63 +0.6 728,859 - SMc03033 0.64 -0.1 728,859 - SMc03033 0.64 -1.0 728,859 - SMc03033 0.64 -0.5 728,859 - SMc03033 0.64 -0.2 729,196 + SMc03034 0.20 -0.8 729,196 + SMc03034 0.20 +0.8 729,196 + SMc03034 0.20 -0.0 729,196 + SMc03034 0.20 -0.3 729,197 - SMc03034 0.20 +0.3 729,197 - SMc03034 0.20 -0.5 729,197 - SMc03034 0.20 -0.2 729,197 - SMc03034 0.20 -0.4 729,286 - SMc03034 0.33 -0.8 729,296 + SMc03034 0.34 -0.5 729,296 + SMc03034 0.34 +0.4 729,296 + SMc03034 0.34 -2.0 729,296 + SMc03034 0.34 +0.4 729,297 - SMc03034 0.34 +0.1 729,297 - SMc03034 0.34 +0.9
Or see this region's nucleotide sequence