Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00919 and SMc00918 are separated by 5 nucleotides SMc00918 and SMc00917 overlap by 4 nucleotides SMc00917 and SMc00916 are separated by 119 nucleotides
SMc00919: SMc00919 - histidyl-tRNA synthetase, at 863,149 to 864,663
SMc00919
SMc00918: SMc00918 - ATP phosphoribosyltransferase regulatory subunit, at 864,669 to 865,808
SMc00918
SMc00917: SMc00917 - ATP phosphoribosyltransferase (EC 2.4.2.17) <small>(from data)</small>, at 865,805 to 866,500
SMc00917
SMc00916: SMc00916 - glutathione S-transferase, at 866,620 to 867,363
SMc00916
Position (kb) 864
865
866 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 864.747 kb on - strand at 864.888 kb on - strand, within SMc00918 at 864.919 kb on - strand, within SMc00918 at 864.919 kb on - strand, within SMc00918 at 864.924 kb on + strand, within SMc00918 at 864.924 kb on + strand, within SMc00918 at 864.925 kb on - strand, within SMc00918 at 864.925 kb on - strand, within SMc00918 at 864.972 kb on + strand, within SMc00918 at 864.972 kb on + strand, within SMc00918 at 865.369 kb on + strand, within SMc00918 at 865.370 kb on - strand, within SMc00918 at 865.629 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.633 kb on - strand, within SMc00918 at 865.633 kb on - strand, within SMc00918 at 865.736 kb on + strand at 865.737 kb on - strand at 865.955 kb on + strand, within SMc00917 at 865.955 kb on + strand, within SMc00917 at 866.129 kb on + strand, within SMc00917 at 866.130 kb on - strand, within SMc00917 at 866.217 kb on - strand, within SMc00917 at 866.217 kb on - strand, within SMc00917 at 866.452 kb on + strand at 866.452 kb on + strand at 866.569 kb on + strand at 866.569 kb on + strand at 866.606 kb on + strand at 866.689 kb on + strand at 866.689 kb on + strand at 866.753 kb on - strand, within SMc00916 at 866.753 kb on - strand, within SMc00916
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 864,747 - -2.0 864,888 - SMc00918 0.19 -4.5 864,919 - SMc00918 0.22 -3.9 864,919 - SMc00918 0.22 -3.6 864,924 + SMc00918 0.22 -3.7 864,924 + SMc00918 0.22 -6.4 864,925 - SMc00918 0.22 -5.6 864,925 - SMc00918 0.22 -2.0 864,972 + SMc00918 0.27 -2.6 864,972 + SMc00918 0.27 -4.7 865,369 + SMc00918 0.61 -1.4 865,370 - SMc00918 0.61 -3.9 865,629 + SMc00918 0.84 -5.4 865,632 + SMc00918 0.84 -0.4 865,632 + SMc00918 0.84 -4.3 865,632 + SMc00918 0.84 -4.0 865,633 - SMc00918 0.85 -2.0 865,633 - SMc00918 0.85 -4.9 865,736 + -2.8 865,737 - -5.1 865,955 + SMc00917 0.22 -3.3 865,955 + SMc00917 0.22 -1.7 866,129 + SMc00917 0.47 -4.3 866,130 - SMc00917 0.47 -4.7 866,217 - SMc00917 0.59 -4.8 866,217 - SMc00917 0.59 -3.3 866,452 + -3.4 866,452 + -4.0 866,569 + -0.0 866,569 + +1.0 866,606 + +0.6 866,689 + +0.4 866,689 + -0.1 866,753 - SMc00916 0.18 +0.2 866,753 - SMc00916 0.18 +0.8
Or see this region's nucleotide sequence