Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00721 and SMc00720 are separated by 99 nucleotides SMc00720 and SMc00719 are separated by 225 nucleotides SMc00719 and SMc00718 are separated by 63 nucleotides SMc00718 and SMc00717 are separated by 364 nucleotides
SMc00721: SMc00721 - transposase, at 2,860,415 to 2,861,578
SMc00721
SMc00720: SMc00720 - 2-component receiver domain-containing protein, at 2,861,678 to 2,862,037
SMc00720
SMc00719: SMc00719 - hypoxanthine-guanine phosphoribosyltransferase, at 2,862,263 to 2,862,808
SMc00719
SMc00718: SMc00718 - hypothetical protein, at 2,862,872 to 2,863,312
SMc00718
SMc00717: SMc00717 - ABC transporter ATP-binding protein, at 2,863,677 to 2,864,360
SMc00717
Position (kb)
2862
2863 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2861.570 kb on + strand at 2861.794 kb on - strand, within SMc00720 at 2862.139 kb on + strand at 2862.186 kb on + strand at 2862.187 kb on - strand at 2862.187 kb on - strand at 2862.187 kb on - strand at 2862.187 kb on - strand at 2862.253 kb on - strand at 2862.264 kb on + strand at 2862.264 kb on + strand at 2862.315 kb on + strand at 2862.588 kb on + strand, within SMc00719 at 2862.706 kb on + strand, within SMc00719 at 2862.707 kb on - strand, within SMc00719 at 2862.771 kb on + strand at 2862.772 kb on - strand at 2862.784 kb on + strand at 2862.785 kb on - strand at 2862.855 kb on - strand at 2862.864 kb on + strand at 2863.000 kb on + strand, within SMc00718 at 2863.203 kb on - strand, within SMc00718 at 2863.216 kb on + strand, within SMc00718 at 2863.218 kb on + strand, within SMc00718 at 2863.359 kb on - strand at 2863.501 kb on - strand at 2863.506 kb on + strand at 2863.507 kb on - strand at 2863.626 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 2,861,570 + -0.2 2,861,794 - SMc00720 0.32 +0.2 2,862,139 + +0.2 2,862,186 + +0.2 2,862,187 - -0.3 2,862,187 - +1.0 2,862,187 - -1.2 2,862,187 - +2.1 2,862,253 - +0.3 2,862,264 + -1.9 2,862,264 + -0.6 2,862,315 + +1.6 2,862,588 + SMc00719 0.60 +1.1 2,862,706 + SMc00719 0.81 -0.2 2,862,707 - SMc00719 0.81 +1.8 2,862,771 + -1.0 2,862,772 - -0.9 2,862,784 + -1.4 2,862,785 - +0.6 2,862,855 - +0.9 2,862,864 + +0.1 2,863,000 + SMc00718 0.29 -0.9 2,863,203 - SMc00718 0.75 +3.1 2,863,216 + SMc00718 0.78 -0.1 2,863,218 + SMc00718 0.78 -1.4 2,863,359 - -0.3 2,863,501 - +0.2 2,863,506 + -0.1 2,863,507 - -1.4 2,863,626 + +0.2
Or see this region's nucleotide sequence