Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00403 and SMc00404 are separated by 136 nucleotides SMc00404 and SMc00405 are separated by 460 nucleotides SMc00405 and SMc00406 are separated by 59 nucleotides
SMc00403: SMc00403 - NOL1/NOP2/SUN family signature protein, at 354,093 to 355,382
SMc00403
SMc00404: SMc00404 - hypothetical protein, at 355,519 to 355,893
SMc00404
SMc00405: SMc00405 - hypothetical protein, at 356,354 to 357,229
SMc00405
SMc00406: SMc00406 - 4Fe-4S ferredoxin, at 357,289 to 358,389
SMc00406
Position (kb) 356
357
358 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 355.449 kb on + strand at 355.449 kb on + strand at 355.453 kb on + strand at 355.453 kb on + strand at 355.453 kb on + strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.454 kb on - strand at 355.538 kb on + strand at 355.538 kb on + strand at 355.776 kb on - strand, within SMc00404 at 355.947 kb on - strand at 356.348 kb on - strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.355 kb on + strand at 356.356 kb on - strand at 356.356 kb on - strand at 356.406 kb on + strand at 356.407 kb on - strand at 356.500 kb on + strand, within SMc00405 at 356.500 kb on + strand, within SMc00405 at 356.500 kb on + strand, within SMc00405 at 356.500 kb on + strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.501 kb on - strand, within SMc00405 at 356.754 kb on + strand, within SMc00405 at 356.754 kb on + strand, within SMc00405 at 356.755 kb on - strand, within SMc00405 at 356.755 kb on - strand, within SMc00405 at 356.907 kb on + strand, within SMc00405 at 356.908 kb on - strand, within SMc00405 at 357.400 kb on + strand, within SMc00406 at 357.400 kb on + strand, within SMc00406 at 357.401 kb on - strand, within SMc00406 at 357.475 kb on + strand, within SMc00406 at 357.638 kb on + strand, within SMc00406 at 357.638 kb on + strand, within SMc00406 at 357.704 kb on + strand, within SMc00406 at 357.705 kb on - strand, within SMc00406 at 357.705 kb on - strand, within SMc00406 at 357.735 kb on - strand, within SMc00406 at 357.815 kb on - strand, within SMc00406 at 357.815 kb on - strand, within SMc00406 at 358.055 kb on + strand, within SMc00406 at 358.056 kb on - strand, within SMc00406 at 358.118 kb on + strand, within SMc00406 at 358.118 kb on + strand, within SMc00406 at 358.119 kb on - strand, within SMc00406 at 358.119 kb on - strand, within SMc00406 at 358.212 kb on + strand, within SMc00406 at 358.212 kb on + strand, within SMc00406 at 358.212 kb on + strand, within SMc00406 at 358.212 kb on + strand, within SMc00406 at 358.213 kb on - strand, within SMc00406 at 358.213 kb on - strand, within SMc00406
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 355,449 + +1.4 355,449 + +2.2 355,453 + +0.5 355,453 + -0.4 355,453 + -0.4 355,454 - +0.8 355,454 - +0.4 355,454 - +0.1 355,454 - +0.5 355,454 - -0.4 355,454 - -1.2 355,454 - -0.9 355,538 + +0.8 355,538 + +0.2 355,776 - SMc00404 0.69 +1.8 355,947 - -0.2 356,348 - +0.4 356,355 + +0.4 356,355 + +1.2 356,355 + +0.0 356,355 + +0.6 356,356 - -1.9 356,356 - +0.3 356,406 + -1.9 356,407 - -0.7 356,500 + SMc00405 0.17 -0.9 356,500 + SMc00405 0.17 -0.9 356,500 + SMc00405 0.17 -2.4 356,500 + SMc00405 0.17 -1.9 356,501 - SMc00405 0.17 -2.1 356,501 - SMc00405 0.17 -3.4 356,501 - SMc00405 0.17 -1.0 356,501 - SMc00405 0.17 -1.8 356,501 - SMc00405 0.17 -0.4 356,754 + SMc00405 0.46 -0.5 356,754 + SMc00405 0.46 -0.9 356,755 - SMc00405 0.46 +1.3 356,755 - SMc00405 0.46 -1.7 356,907 + SMc00405 0.63 -0.3 356,908 - SMc00405 0.63 -0.6 357,400 + SMc00406 0.10 +0.0 357,400 + SMc00406 0.10 -2.4 357,401 - SMc00406 0.10 +0.4 357,475 + SMc00406 0.17 -0.2 357,638 + SMc00406 0.32 +0.1 357,638 + SMc00406 0.32 -0.4 357,704 + SMc00406 0.38 -0.5 357,705 - SMc00406 0.38 +0.2 357,705 - SMc00406 0.38 +0.2 357,735 - SMc00406 0.41 +0.6 357,815 - SMc00406 0.48 +0.6 357,815 - SMc00406 0.48 -1.4 358,055 + SMc00406 0.70 -0.9 358,056 - SMc00406 0.70 -1.4 358,118 + SMc00406 0.75 +0.1 358,118 + SMc00406 0.75 +0.1 358,119 - SMc00406 0.75 -0.8 358,119 - SMc00406 0.75 -1.0 358,212 + SMc00406 0.84 +0.1 358,212 + SMc00406 0.84 +0.5 358,212 + SMc00406 0.84 +0.3 358,212 + SMc00406 0.84 -0.9 358,213 - SMc00406 0.84 +0.1 358,213 - SMc00406 0.84 +0.3
Or see this region's nucleotide sequence