Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21168 and SM_b21169 are separated by 35 nucleotides SM_b21169 and SM_b21170 are separated by 19 nucleotides SM_b21170 and SM_b21171 overlap by 4 nucleotides
SM_b21168: SM_b21168 - integral membrane transporter protein, at 915,182 to 916,366
_b21168
SM_b21169: SM_b21169 - ArsR family transcriptional regulator, at 916,402 to 916,827
_b21169
SM_b21170: SM_b21170 - guanylate kinase, at 916,847 to 917,434
_b21170
SM_b21171: SM_b21171 - enzyme protein, at 917,431 to 918,570
_b21171
Position (kb) 916
917
918 Strain fitness (log2 ratio) -2
-1
0
1
2 at 916.136 kb on + strand, within SM_b21168 at 916.137 kb on - strand, within SM_b21168 at 916.216 kb on - strand, within SM_b21168 at 916.327 kb on + strand at 916.327 kb on + strand at 916.328 kb on - strand at 916.442 kb on + strand at 916.505 kb on + strand, within SM_b21169 at 916.505 kb on + strand, within SM_b21169 at 916.505 kb on + strand, within SM_b21169 at 916.505 kb on + strand, within SM_b21169 at 916.506 kb on - strand, within SM_b21169 at 916.614 kb on + strand, within SM_b21169 at 916.614 kb on + strand, within SM_b21169 at 916.614 kb on + strand, within SM_b21169 at 916.615 kb on - strand, within SM_b21169 at 916.621 kb on + strand, within SM_b21169 at 916.621 kb on + strand, within SM_b21169 at 916.622 kb on - strand at 916.622 kb on - strand, within SM_b21169 at 916.622 kb on - strand, within SM_b21169 at 916.622 kb on - strand at 916.622 kb on - strand, within SM_b21169 at 916.622 kb on - strand, within SM_b21169 at 916.622 kb on - strand, within SM_b21169 at 916.659 kb on + strand, within SM_b21169 at 916.660 kb on - strand, within SM_b21169 at 916.660 kb on - strand, within SM_b21169 at 916.743 kb on + strand, within SM_b21169 at 916.867 kb on + strand at 916.867 kb on + strand at 917.081 kb on - strand, within SM_b21170 at 917.127 kb on - strand, within SM_b21170 at 917.181 kb on + strand, within SM_b21170 at 917.182 kb on - strand, within SM_b21170 at 917.182 kb on - strand, within SM_b21170 at 917.476 kb on + strand at 917.477 kb on - strand at 917.660 kb on + strand, within SM_b21171 at 917.745 kb on + strand, within SM_b21171 at 917.945 kb on + strand, within SM_b21171 at 917.945 kb on + strand, within SM_b21171 at 918.021 kb on - strand, within SM_b21171 at 918.024 kb on - strand, within SM_b21171 at 918.033 kb on - strand, within SM_b21171 at 918.033 kb on - strand, within SM_b21171 at 918.122 kb on + strand, within SM_b21171 at 918.122 kb on + strand, within SM_b21171 at 918.122 kb on + strand, within SM_b21171 at 918.428 kb on + strand, within SM_b21171 at 918.429 kb on - strand, within SM_b21171
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 916,136 + SM_b21168 0.81 -0.4 916,137 - SM_b21168 0.81 +0.3 916,216 - SM_b21168 0.87 +0.6 916,327 + -0.1 916,327 + -0.3 916,328 - -0.1 916,442 + +0.1 916,505 + SM_b21169 0.24 -0.6 916,505 + SM_b21169 0.24 -0.4 916,505 + SM_b21169 0.24 -0.1 916,505 + SM_b21169 0.24 +0.7 916,506 - SM_b21169 0.24 -0.7 916,614 + SM_b21169 0.50 +0.0 916,614 + SM_b21169 0.50 -0.1 916,614 + SM_b21169 0.50 -0.6 916,615 - SM_b21169 0.50 -1.0 916,621 + SM_b21169 0.51 -1.4 916,621 + SM_b21169 0.51 -0.8 916,622 - +1.1 916,622 - SM_b21169 0.52 -0.1 916,622 - SM_b21169 0.52 -0.1 916,622 - -0.7 916,622 - SM_b21169 0.52 +0.0 916,622 - SM_b21169 0.52 +0.6 916,622 - SM_b21169 0.52 -0.1 916,659 + SM_b21169 0.60 -0.3 916,660 - SM_b21169 0.61 -0.5 916,660 - SM_b21169 0.61 +2.1 916,743 + SM_b21169 0.80 -2.1 916,867 + +0.4 916,867 + +0.4 917,081 - SM_b21170 0.40 +1.7 917,127 - SM_b21170 0.48 +1.2 917,181 + SM_b21170 0.57 -0.3 917,182 - SM_b21170 0.57 +1.0 917,182 - SM_b21170 0.57 +1.0 917,476 + +0.4 917,477 - +0.7 917,660 + SM_b21171 0.20 -1.4 917,745 + SM_b21171 0.28 +1.6 917,945 + SM_b21171 0.45 +0.1 917,945 + SM_b21171 0.45 -2.3 918,021 - SM_b21171 0.52 -0.4 918,024 - SM_b21171 0.52 -0.9 918,033 - SM_b21171 0.53 +0.8 918,033 - SM_b21171 0.53 -0.8 918,122 + SM_b21171 0.61 -0.7 918,122 + SM_b21171 0.61 +0.2 918,122 + SM_b21171 0.61 -0.0 918,428 + SM_b21171 0.87 +0.6 918,429 - SM_b21171 0.88 -1.0
Or see this region's nucleotide sequence