Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20717

Experiment: Min media with glucose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b20716 and SM_b20717 are separated by 88 nucleotidesSM_b20717 and SM_b20718 are separated by 266 nucleotides SM_b20716: SM_b20716 - hypothetical protein, at 1,519,556 to 1,520,452 _b20716 SM_b20717: SM_b20717 - LacI family transcriptional regulator, at 1,520,541 to 1,521,566 _b20717 SM_b20718: SM_b20718 - sugar uptake ABC transporter ATP-binding protein, at 1,521,833 to 1,523,359 _b20718 Position (kb) 1520 1521 1522Strain fitness (log2 ratio) -2 -1 0 1 2at 1519.667 kb on + strand, within SM_b20716at 1519.719 kb on + strand, within SM_b20716at 1519.719 kb on + strand, within SM_b20716at 1519.896 kb on + strand, within SM_b20716at 1519.897 kb on - strand, within SM_b20716at 1519.932 kb on + strand, within SM_b20716at 1520.042 kb on + strand, within SM_b20716at 1520.212 kb on + strand, within SM_b20716at 1520.279 kb on + strand, within SM_b20716at 1520.279 kb on + strand, within SM_b20716at 1520.330 kb on + strand, within SM_b20716at 1520.330 kb on + strand, within SM_b20716at 1520.331 kb on - strand, within SM_b20716at 1520.331 kb on - strand, within SM_b20716at 1520.331 kb on - strand, within SM_b20716at 1520.348 kb on - strand, within SM_b20716at 1520.403 kb on + strandat 1520.469 kb on + strandat 1520.490 kb on + strandat 1520.495 kb on + strandat 1520.495 kb on + strandat 1520.495 kb on + strandat 1520.542 kb on + strandat 1520.766 kb on + strand, within SM_b20717at 1520.767 kb on - strand, within SM_b20717at 1520.773 kb on + strand, within SM_b20717at 1520.774 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.922 kb on - strand, within SM_b20717at 1520.981 kb on + strand, within SM_b20717at 1520.981 kb on + strand, within SM_b20717at 1520.983 kb on + strand, within SM_b20717at 1521.091 kb on + strand, within SM_b20717at 1521.091 kb on + strand, within SM_b20717at 1521.091 kb on + strand, within SM_b20717at 1521.091 kb on + strand, within SM_b20717at 1521.091 kb on + strand, within SM_b20717at 1521.092 kb on - strand, within SM_b20717at 1521.092 kb on - strand, within SM_b20717at 1521.092 kb on - strand, within SM_b20717at 1521.092 kb on - strand, within SM_b20717at 1521.092 kb on - strand, within SM_b20717at 1521.326 kb on + strand, within SM_b20717at 1521.326 kb on + strand, within SM_b20717at 1521.327 kb on - strand, within SM_b20717at 1521.418 kb on + strand, within SM_b20717at 1521.527 kb on + strandat 1521.528 kb on - strandat 1521.590 kb on - strandat 1521.686 kb on + strandat 1521.701 kb on + strandat 1521.701 kb on + strandat 1521.701 kb on + strandat 1522.202 kb on + strand, within SM_b20718at 1522.202 kb on + strand, within SM_b20718at 1522.202 kb on + strand, within SM_b20718at 1522.202 kb on + strand, within SM_b20718at 1522.202 kb on + strand, within SM_b20718at 1522.203 kb on - strand, within SM_b20718at 1522.203 kb on - strand, within SM_b20718at 1522.203 kb on - strand, within SM_b20718at 1522.203 kb on - strand, within SM_b20718at 1522.204 kb on + strand, within SM_b20718at 1522.204 kb on + strand, within SM_b20718at 1522.204 kb on + strand, within SM_b20718at 1522.205 kb on - strand, within SM_b20718at 1522.491 kb on + strand, within SM_b20718

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
remove
1,519,667 + SM_b20716 0.12 +0.2
1,519,719 + SM_b20716 0.18 +0.2
1,519,719 + SM_b20716 0.18 +0.4
1,519,896 + SM_b20716 0.38 +0.4
1,519,897 - SM_b20716 0.38 -0.3
1,519,932 + SM_b20716 0.42 +0.1
1,520,042 + SM_b20716 0.54 +0.5
1,520,212 + SM_b20716 0.73 -0.1
1,520,279 + SM_b20716 0.81 +1.1
1,520,279 + SM_b20716 0.81 +0.5
1,520,330 + SM_b20716 0.86 +0.7
1,520,330 + SM_b20716 0.86 -0.8
1,520,331 - SM_b20716 0.86 +0.4
1,520,331 - SM_b20716 0.86 +0.0
1,520,331 - SM_b20716 0.86 +0.1
1,520,348 - SM_b20716 0.88 +0.6
1,520,403 + +0.0
1,520,469 + -0.1
1,520,490 + +0.1
1,520,495 + +0.3
1,520,495 + -0.2
1,520,495 + +0.4
1,520,542 + +0.6
1,520,766 + SM_b20717 0.22 +0.3
1,520,767 - SM_b20717 0.22 +0.1
1,520,773 + SM_b20717 0.23 +0.7
1,520,774 - SM_b20717 0.23 +0.7
1,520,922 - SM_b20717 0.37 -2.2
1,520,922 - SM_b20717 0.37 +1.5
1,520,922 - SM_b20717 0.37 +0.3
1,520,922 - SM_b20717 0.37 +0.9
1,520,922 - SM_b20717 0.37 -0.4
1,520,922 - SM_b20717 0.37 +0.1
1,520,981 + SM_b20717 0.43 +1.3
1,520,981 + SM_b20717 0.43 -0.0
1,520,983 + SM_b20717 0.43 +0.2
1,521,091 + SM_b20717 0.54 +0.1
1,521,091 + SM_b20717 0.54 -0.2
1,521,091 + SM_b20717 0.54 +0.3
1,521,091 + SM_b20717 0.54 +0.1
1,521,091 + SM_b20717 0.54 +0.2
1,521,092 - SM_b20717 0.54 +0.4
1,521,092 - SM_b20717 0.54 +0.5
1,521,092 - SM_b20717 0.54 -1.2
1,521,092 - SM_b20717 0.54 -1.1
1,521,092 - SM_b20717 0.54 +1.9
1,521,326 + SM_b20717 0.77 -0.8
1,521,326 + SM_b20717 0.77 +0.8
1,521,327 - SM_b20717 0.77 +0.8
1,521,418 + SM_b20717 0.85 +0.3
1,521,527 + -1.7
1,521,528 - +0.2
1,521,590 - -0.4
1,521,686 + +0.2
1,521,701 + +0.3
1,521,701 + +0.2
1,521,701 + -0.4
1,522,202 + SM_b20718 0.24 +0.9
1,522,202 + SM_b20718 0.24 -0.5
1,522,202 + SM_b20718 0.24 -0.3
1,522,202 + SM_b20718 0.24 -1.8
1,522,202 + SM_b20718 0.24 +0.2
1,522,203 - SM_b20718 0.24 -1.6
1,522,203 - SM_b20718 0.24 +0.1
1,522,203 - SM_b20718 0.24 +1.6
1,522,203 - SM_b20718 0.24 -0.3
1,522,204 + SM_b20718 0.24 -0.6
1,522,204 + SM_b20718 0.24 -0.3
1,522,204 + SM_b20718 0.24 +0.1
1,522,205 - SM_b20718 0.24 -1.4
1,522,491 + SM_b20718 0.43 -0.1

Or see this region's nucleotide sequence