Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20471

Experiment: Min media with glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20470 and SM_b20471 are separated by 30 nucleotidesSM_b20471 and SM_b20472 are separated by 13 nucleotides SM_b20470: SM_b20470 - hypothetical protein, at 483,955 to 484,386 _b20470 SM_b20471: SM_b20471 - hypothetical protein, at 484,417 to 484,566 _b20471 SM_b20472: SM_b20472 - nodulation protein, at 484,580 to 486,412 _b20472 Position (kb) 484 485Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 483.453 kb on + strandat 483.454 kb on - strandat 483.468 kb on + strandat 483.479 kb on + strandat 483.479 kb on + strandat 483.480 kb on - strandat 483.509 kb on + strandat 483.546 kb on + strandat 483.546 kb on + strandat 483.626 kb on + strandat 483.709 kb on + strandat 483.823 kb on - strandat 483.823 kb on - strandat 483.852 kb on + strandat 484.023 kb on + strand, within SM_b20470at 484.024 kb on - strand, within SM_b20470at 484.047 kb on + strand, within SM_b20470at 484.083 kb on - strand, within SM_b20470at 484.193 kb on + strand, within SM_b20470at 484.193 kb on + strand, within SM_b20470at 484.194 kb on - strand, within SM_b20470at 484.194 kb on - strand, within SM_b20470at 484.194 kb on - strand, within SM_b20470at 484.198 kb on - strand, within SM_b20470at 484.198 kb on - strand, within SM_b20470at 484.198 kb on - strand, within SM_b20470at 484.198 kb on - strand, within SM_b20470at 484.198 kb on - strand, within SM_b20470at 484.237 kb on + strand, within SM_b20470at 484.238 kb on - strand, within SM_b20470at 484.238 kb on - strand, within SM_b20470at 484.257 kb on + strand, within SM_b20470at 484.327 kb on + strand, within SM_b20470at 484.327 kb on + strand, within SM_b20470at 484.327 kb on + strand, within SM_b20470at 484.328 kb on - strand, within SM_b20470at 484.444 kb on + strand, within SM_b20471at 484.444 kb on + strand, within SM_b20471at 484.444 kb on + strandat 484.444 kb on + strand, within SM_b20471at 484.444 kb on + strand, within SM_b20471at 484.445 kb on - strand, within SM_b20471at 484.445 kb on - strand, within SM_b20471at 484.445 kb on - strand, within SM_b20471at 484.445 kb on - strand, within SM_b20471at 484.445 kb on - strand, within SM_b20471at 484.447 kb on - strandat 484.553 kb on - strandat 484.553 kb on - strandat 484.553 kb on - strandat 484.585 kb on + strandat 484.585 kb on + strandat 484.586 kb on - strandat 484.586 kb on - strandat 484.586 kb on - strandat 484.586 kb on - strandat 484.586 kb on - strandat 484.590 kb on + strandat 484.595 kb on - strandat 484.608 kb on - strandat 484.721 kb on + strandat 484.722 kb on - strandat 484.722 kb on - strandat 484.776 kb on - strand, within SM_b20472at 484.776 kb on - strand, within SM_b20472at 484.817 kb on + strand, within SM_b20472at 484.817 kb on + strand, within SM_b20472at 484.818 kb on - strand, within SM_b20472at 484.818 kb on - strand, within SM_b20472at 484.914 kb on - strand, within SM_b20472at 484.917 kb on + strand, within SM_b20472at 484.918 kb on - strand, within SM_b20472at 485.100 kb on + strand, within SM_b20472at 485.100 kb on + strand, within SM_b20472at 485.101 kb on - strand, within SM_b20472at 485.101 kb on - strand, within SM_b20472at 485.104 kb on + strand, within SM_b20472at 485.156 kb on + strand, within SM_b20472at 485.156 kb on + strand, within SM_b20472at 485.157 kb on - strand, within SM_b20472at 485.159 kb on + strand, within SM_b20472at 485.160 kb on - strand, within SM_b20472at 485.189 kb on + strand, within SM_b20472at 485.191 kb on + strand, within SM_b20472at 485.191 kb on + strand, within SM_b20472at 485.192 kb on - strand, within SM_b20472at 485.214 kb on - strand, within SM_b20472

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Per-strain Table

Position Strand Gene LocusTag Fraction Min media with glucose
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483,453 + -0.4
483,454 - -0.1
483,468 + +0.2
483,479 + -0.1
483,479 + -0.3
483,480 - -5.2
483,509 + -0.2
483,546 + -0.9
483,546 + +0.7
483,626 + +0.3
483,709 + +0.5
483,823 - -0.5
483,823 - +0.2
483,852 + -0.0
484,023 + SM_b20470 0.16 -0.1
484,024 - SM_b20470 0.16 +0.0
484,047 + SM_b20470 0.21 -0.0
484,083 - SM_b20470 0.30 +0.7
484,193 + SM_b20470 0.55 -0.2
484,193 + SM_b20470 0.55 +0.6
484,194 - SM_b20470 0.55 +0.0
484,194 - SM_b20470 0.55 -0.1
484,194 - SM_b20470 0.55 +0.4
484,198 - SM_b20470 0.56 +0.2
484,198 - SM_b20470 0.56 +0.2
484,198 - SM_b20470 0.56 -0.5
484,198 - SM_b20470 0.56 -0.5
484,198 - SM_b20470 0.56 -0.0
484,237 + SM_b20470 0.65 -0.0
484,238 - SM_b20470 0.66 +0.2
484,238 - SM_b20470 0.66 +0.5
484,257 + SM_b20470 0.70 +0.5
484,327 + SM_b20470 0.86 -0.2
484,327 + SM_b20470 0.86 -0.0
484,327 + SM_b20470 0.86 -0.7
484,328 - SM_b20470 0.86 -0.9
484,444 + SM_b20471 0.18 -0.2
484,444 + SM_b20471 0.18 -0.8
484,444 + +1.7
484,444 + SM_b20471 0.18 -0.6
484,444 + SM_b20471 0.18 -1.2
484,445 - SM_b20471 0.19 -0.1
484,445 - SM_b20471 0.19 +0.2
484,445 - SM_b20471 0.19 -1.6
484,445 - SM_b20471 0.19 +0.5
484,445 - SM_b20471 0.19 -1.3
484,447 - +0.4
484,553 - -0.3
484,553 - +0.0
484,553 - +0.4
484,585 + -0.1
484,585 + -0.8
484,586 - -0.9
484,586 - +0.1
484,586 - +1.2
484,586 - -0.1
484,586 - -0.3
484,590 + +0.0
484,595 - +0.6
484,608 - -2.3
484,721 + +0.4
484,722 - -0.1
484,722 - -1.2
484,776 - SM_b20472 0.11 +0.2
484,776 - SM_b20472 0.11 +0.2
484,817 + SM_b20472 0.13 -0.0
484,817 + SM_b20472 0.13 -0.5
484,818 - SM_b20472 0.13 +0.2
484,818 - SM_b20472 0.13 -0.4
484,914 - SM_b20472 0.18 +0.4
484,917 + SM_b20472 0.18 -0.5
484,918 - SM_b20472 0.18 -0.5
485,100 + SM_b20472 0.28 -0.6
485,100 + SM_b20472 0.28 +1.0
485,101 - SM_b20472 0.28 -0.2
485,101 - SM_b20472 0.28 -0.2
485,104 + SM_b20472 0.29 +0.3
485,156 + SM_b20472 0.31 -0.3
485,156 + SM_b20472 0.31 -2.2
485,157 - SM_b20472 0.31 -0.9
485,159 + SM_b20472 0.32 +0.8
485,160 - SM_b20472 0.32 +0.7
485,189 + SM_b20472 0.33 +0.9
485,191 + SM_b20472 0.33 -0.2
485,191 + SM_b20472 0.33 +0.7
485,192 - SM_b20472 0.33 +0.1
485,214 - SM_b20472 0.35 -0.2

Or see this region's nucleotide sequence