Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20234 and SM_b20235 are separated by 1 nucleotides SM_b20235 and SM_b20236 are separated by 119 nucleotides SM_b20236 and SM_b20238 are separated by 327 nucleotides
SM_b20234: SM_b20234 - hypothetical protein, at 239,322 to 240,518
_b20234
SM_b20235: SM_b20235 - sugar ABC transporter ATP-binding protein, at 240,520 to 241,611
_b20235
SM_b20236: SM_b20236 - hypothetical protein, at 241,731 to 242,075
_b20236
SM_b20238: SM_b20238 - hypothetical protein, at 242,403 to 243,197
_b20238
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 239.636 kb on + strand, within SM_b20234 at 239.636 kb on + strand, within SM_b20234 at 239.688 kb on + strand, within SM_b20234 at 239.688 kb on + strand, within SM_b20234 at 239.760 kb on + strand, within SM_b20234 at 239.760 kb on + strand, within SM_b20234 at 239.760 kb on + strand, within SM_b20234 at 239.761 kb on - strand, within SM_b20234 at 239.761 kb on - strand, within SM_b20234 at 239.761 kb on - strand, within SM_b20234 at 239.761 kb on - strand, within SM_b20234 at 239.761 kb on - strand, within SM_b20234 at 239.763 kb on + strand, within SM_b20234 at 239.763 kb on + strand, within SM_b20234 at 239.763 kb on + strand, within SM_b20234 at 239.764 kb on - strand, within SM_b20234 at 239.764 kb on - strand, within SM_b20234 at 239.764 kb on - strand, within SM_b20234 at 239.766 kb on + strand, within SM_b20234 at 239.766 kb on + strand, within SM_b20234 at 239.766 kb on + strand, within SM_b20234 at 239.767 kb on - strand, within SM_b20234 at 239.768 kb on + strand, within SM_b20234 at 239.769 kb on - strand, within SM_b20234 at 239.769 kb on - strand, within SM_b20234 at 239.919 kb on + strand, within SM_b20234 at 239.952 kb on + strand, within SM_b20234 at 239.953 kb on - strand, within SM_b20234 at 239.953 kb on - strand, within SM_b20234 at 239.962 kb on + strand, within SM_b20234 at 239.962 kb on + strand, within SM_b20234 at 239.963 kb on - strand, within SM_b20234 at 239.963 kb on - strand, within SM_b20234 at 240.068 kb on + strand, within SM_b20234 at 240.192 kb on + strand, within SM_b20234 at 240.193 kb on - strand, within SM_b20234 at 240.225 kb on + strand, within SM_b20234 at 240.225 kb on + strand, within SM_b20234 at 240.225 kb on + strand, within SM_b20234 at 240.226 kb on - strand, within SM_b20234 at 240.226 kb on - strand, within SM_b20234 at 240.227 kb on + strand, within SM_b20234 at 240.228 kb on - strand, within SM_b20234 at 240.228 kb on - strand, within SM_b20234 at 240.228 kb on - strand, within SM_b20234 at 240.238 kb on - strand, within SM_b20234 at 240.292 kb on - strand, within SM_b20234 at 240.380 kb on + strand, within SM_b20234 at 240.381 kb on - strand, within SM_b20234 at 240.537 kb on - strand at 240.714 kb on + strand, within SM_b20235 at 240.714 kb on + strand, within SM_b20235 at 240.715 kb on - strand, within SM_b20235 at 240.715 kb on - strand, within SM_b20235 at 240.749 kb on + strand, within SM_b20235 at 240.769 kb on + strand, within SM_b20235 at 240.769 kb on + strand, within SM_b20235 at 240.769 kb on + strand, within SM_b20235 at 240.770 kb on - strand, within SM_b20235 at 240.770 kb on - strand, within SM_b20235 at 240.778 kb on + strand, within SM_b20235 at 241.081 kb on - strand, within SM_b20235 at 241.081 kb on - strand, within SM_b20235 at 241.081 kb on - strand, within SM_b20235 at 241.084 kb on + strand, within SM_b20235 at 241.084 kb on + strand, within SM_b20235 at 241.085 kb on - strand, within SM_b20235 at 241.085 kb on - strand, within SM_b20235 at 241.085 kb on - strand at 241.424 kb on + strand, within SM_b20235 at 241.425 kb on - strand, within SM_b20235 at 241.689 kb on - strand at 241.689 kb on - strand at 241.856 kb on + strand, within SM_b20236 at 241.929 kb on - strand, within SM_b20236 at 241.935 kb on + strand, within SM_b20236 at 242.018 kb on - strand, within SM_b20236 at 242.035 kb on + strand, within SM_b20236 at 242.035 kb on + strand, within SM_b20236 at 242.049 kb on + strand at 242.182 kb on - strand at 242.221 kb on + strand at 242.221 kb on + strand at 242.222 kb on - strand at 242.241 kb on - strand at 242.383 kb on + strand at 242.384 kb on - strand at 242.474 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 239,636 + SM_b20234 0.26 +0.0 239,636 + SM_b20234 0.26 +0.6 239,688 + SM_b20234 0.31 +2.7 239,688 + SM_b20234 0.31 +1.0 239,760 + SM_b20234 0.37 +0.8 239,760 + SM_b20234 0.37 +0.2 239,760 + SM_b20234 0.37 -0.1 239,761 - SM_b20234 0.37 -1.2 239,761 - SM_b20234 0.37 -0.1 239,761 - SM_b20234 0.37 -1.7 239,761 - SM_b20234 0.37 +0.2 239,761 - SM_b20234 0.37 +1.1 239,763 + SM_b20234 0.37 +0.3 239,763 + SM_b20234 0.37 +1.7 239,763 + SM_b20234 0.37 +1.0 239,764 - SM_b20234 0.37 +0.6 239,764 - SM_b20234 0.37 -0.1 239,764 - SM_b20234 0.37 +0.2 239,766 + SM_b20234 0.37 +0.1 239,766 + SM_b20234 0.37 +0.4 239,766 + SM_b20234 0.37 +0.3 239,767 - SM_b20234 0.37 +0.2 239,768 + SM_b20234 0.37 +0.1 239,769 - SM_b20234 0.37 -0.3 239,769 - SM_b20234 0.37 +0.0 239,919 + SM_b20234 0.50 +0.1 239,952 + SM_b20234 0.53 +0.2 239,953 - SM_b20234 0.53 -0.8 239,953 - SM_b20234 0.53 -0.1 239,962 + SM_b20234 0.53 -0.6 239,962 + SM_b20234 0.53 +0.0 239,963 - SM_b20234 0.54 +0.5 239,963 - SM_b20234 0.54 -1.5 240,068 + SM_b20234 0.62 +0.1 240,192 + SM_b20234 0.73 -0.2 240,193 - SM_b20234 0.73 -0.5 240,225 + SM_b20234 0.75 -0.1 240,225 + SM_b20234 0.75 -1.0 240,225 + SM_b20234 0.75 -2.9 240,226 - SM_b20234 0.76 -0.5 240,226 - SM_b20234 0.76 -0.6 240,227 + SM_b20234 0.76 -0.7 240,228 - SM_b20234 0.76 -0.5 240,228 - SM_b20234 0.76 -1.1 240,228 - SM_b20234 0.76 +0.7 240,238 - SM_b20234 0.77 -0.6 240,292 - SM_b20234 0.81 -0.5 240,380 + SM_b20234 0.88 +0.2 240,381 - SM_b20234 0.88 +0.1 240,537 - +0.7 240,714 + SM_b20235 0.18 -0.3 240,714 + SM_b20235 0.18 -1.1 240,715 - SM_b20235 0.18 +0.2 240,715 - SM_b20235 0.18 +0.3 240,749 + SM_b20235 0.21 -1.1 240,769 + SM_b20235 0.23 -0.3 240,769 + SM_b20235 0.23 -0.5 240,769 + SM_b20235 0.23 +0.0 240,770 - SM_b20235 0.23 -0.3 240,770 - SM_b20235 0.23 +0.5 240,778 + SM_b20235 0.24 -0.1 241,081 - SM_b20235 0.51 -0.2 241,081 - SM_b20235 0.51 +0.0 241,081 - SM_b20235 0.51 -0.3 241,084 + SM_b20235 0.52 -0.4 241,084 + SM_b20235 0.52 -0.8 241,085 - SM_b20235 0.52 +0.1 241,085 - SM_b20235 0.52 +0.7 241,085 - +1.7 241,424 + SM_b20235 0.83 -2.9 241,425 - SM_b20235 0.83 -1.3 241,689 - -0.7 241,689 - -2.5 241,856 + SM_b20236 0.36 +0.3 241,929 - SM_b20236 0.57 -0.3 241,935 + SM_b20236 0.59 +0.1 242,018 - SM_b20236 0.83 +0.1 242,035 + SM_b20236 0.88 -1.3 242,035 + SM_b20236 0.88 +0.5 242,049 + -0.1 242,182 - -0.3 242,221 + -2.1 242,221 + +0.6 242,222 - +0.4 242,241 - -0.5 242,383 + -1.3 242,384 - -0.1 242,474 - -1.4
Or see this region's nucleotide sequence