Experiment: Min media with glucose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20070 and SM_b20071 are separated by 217 nucleotides SM_b20071 and SM_b20072 are separated by 471 nucleotides
SM_b20070: SM_b20070 - sulfate permease, at 77,869 to 79,356
_b20070
SM_b20071: SM_b20071 - efflux protein, at 79,574 to 80,767
_b20071
SM_b20072: SM_b20072 - rhizopine binding protein, at 81,239 to 82,168
_b20072
Position (kb) 79
80
81 Strain fitness (log2 ratio) -1
0
1
2 at 78.683 kb on + strand, within SM_b20070 at 78.683 kb on + strand, within SM_b20070 at 78.863 kb on + strand, within SM_b20070 at 78.864 kb on - strand, within SM_b20070 at 78.875 kb on + strand, within SM_b20070 at 78.876 kb on - strand, within SM_b20070 at 78.908 kb on + strand, within SM_b20070 at 78.909 kb on - strand, within SM_b20070 at 79.085 kb on + strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.086 kb on - strand, within SM_b20070 at 79.265 kb on - strand at 79.332 kb on + strand at 79.332 kb on + strand at 79.335 kb on - strand at 79.335 kb on - strand at 79.374 kb on + strand at 79.375 kb on - strand at 79.495 kb on + strand at 79.495 kb on + strand at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.830 kb on + strand, within SM_b20071 at 79.831 kb on - strand, within SM_b20071 at 80.034 kb on + strand, within SM_b20071 at 80.130 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.322 kb on + strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.323 kb on - strand, within SM_b20071 at 80.628 kb on + strand, within SM_b20071 at 80.629 kb on - strand, within SM_b20071 at 80.629 kb on - strand, within SM_b20071 at 80.731 kb on - strand at 80.754 kb on - strand at 80.848 kb on + strand at 81.217 kb on - strand at 81.392 kb on + strand, within SM_b20072 at 81.392 kb on + strand, within SM_b20072 at 81.393 kb on - strand, within SM_b20072 at 81.721 kb on - strand, within SM_b20072
Per-strain Table
Position Strand Gene LocusTag Fraction Min media with glucose remove 78,683 + SM_b20070 0.55 -0.0 78,683 + SM_b20070 0.55 +0.1 78,863 + SM_b20070 0.67 +0.8 78,864 - SM_b20070 0.67 +0.6 78,875 + SM_b20070 0.68 -0.4 78,876 - SM_b20070 0.68 +0.3 78,908 + SM_b20070 0.70 +0.3 78,909 - SM_b20070 0.70 +0.6 79,085 + SM_b20070 0.82 +2.1 79,086 - SM_b20070 0.82 +2.6 79,086 - SM_b20070 0.82 +0.0 79,086 - SM_b20070 0.82 +0.4 79,086 - SM_b20070 0.82 +0.4 79,265 - -0.3 79,332 + +0.1 79,332 + -0.6 79,335 - +0.4 79,335 - +1.3 79,374 + +0.0 79,375 - -1.2 79,495 + +0.4 79,495 + +1.4 79,830 + SM_b20071 0.21 -0.4 79,830 + SM_b20071 0.21 -0.4 79,830 + SM_b20071 0.21 -0.4 79,830 + SM_b20071 0.21 +0.2 79,830 + SM_b20071 0.21 +0.6 79,831 - SM_b20071 0.22 -0.2 80,034 + SM_b20071 0.39 +0.4 80,130 + SM_b20071 0.47 -0.7 80,322 + SM_b20071 0.63 -1.6 80,322 + SM_b20071 0.63 -1.0 80,322 + SM_b20071 0.63 -0.2 80,322 + SM_b20071 0.63 +0.1 80,323 - SM_b20071 0.63 +0.0 80,323 - SM_b20071 0.63 +0.1 80,323 - SM_b20071 0.63 -0.5 80,628 + SM_b20071 0.88 -0.2 80,629 - SM_b20071 0.88 +0.7 80,629 - SM_b20071 0.88 -0.0 80,731 - +1.1 80,754 - -1.5 80,848 + -0.7 81,217 - +0.2 81,392 + SM_b20072 0.16 +0.8 81,392 + SM_b20072 0.16 -0.3 81,393 - SM_b20072 0.17 +0.0 81,721 - SM_b20072 0.52 -0.3
Or see this region's nucleotide sequence