Strain Fitness in Methanococcus maripaludis S2 around MMP_RS05110

Experiment: Formate with nitrate 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS05105 and MMP_RS05110 are separated by 4 nucleotidesMMP_RS05110 and MMP_RS05115 are separated by 10 nucleotides MMP_RS05105: MMP_RS05105 - thymidylate synthase, at 972,543 to 973,418 _RS05105 MMP_RS05110: MMP_RS05110 - 16S ribosomal RNA methyltransferase A, at 973,423 to 974,226 _RS05110 MMP_RS05115: MMP_RS05115 - 50S ribosomal protein L11 methyltransferase, at 974,237 to 975,124 _RS05115 Position (kb) 973 974 975Strain fitness (log2 ratio) -2 -1 0 1at 972.423 kb on + strandat 972.426 kb on - strandat 972.427 kb on + strandat 972.427 kb on + strandat 972.435 kb on + strandat 972.586 kb on + strandat 972.586 kb on + strandat 972.587 kb on - strandat 972.587 kb on - strandat 972.591 kb on - strandat 972.591 kb on - strandat 972.633 kb on - strand, within MMP_RS05105at 972.791 kb on - strand, within MMP_RS05105at 972.842 kb on - strand, within MMP_RS05105at 972.915 kb on - strand, within MMP_RS05105at 972.932 kb on + strand, within MMP_RS05105at 973.021 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.042 kb on - strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.043 kb on + strand, within MMP_RS05105at 973.206 kb on - strand, within MMP_RS05105at 973.206 kb on - strand, within MMP_RS05105at 973.206 kb on - strand, within MMP_RS05105at 973.210 kb on + strand, within MMP_RS05105at 973.212 kb on - strand, within MMP_RS05105at 973.213 kb on + strand, within MMP_RS05105at 973.213 kb on + strand, within MMP_RS05105at 973.217 kb on - strand, within MMP_RS05105at 973.217 kb on - strand, within MMP_RS05105at 973.280 kb on + strand, within MMP_RS05105at 973.287 kb on - strand, within MMP_RS05105at 973.287 kb on - strand, within MMP_RS05105at 973.287 kb on - strand, within MMP_RS05105at 973.298 kb on - strand, within MMP_RS05105at 973.299 kb on + strand, within MMP_RS05105at 973.300 kb on - strand, within MMP_RS05105at 973.421 kb on - strandat 973.453 kb on - strandat 973.506 kb on - strand, within MMP_RS05110at 973.671 kb on + strand, within MMP_RS05110at 973.711 kb on - strand, within MMP_RS05110at 973.712 kb on + strand, within MMP_RS05110at 973.775 kb on - strand, within MMP_RS05110at 973.776 kb on + strand, within MMP_RS05110at 973.810 kb on + strand, within MMP_RS05110at 973.854 kb on + strand, within MMP_RS05110at 973.987 kb on - strand, within MMP_RS05110at 973.987 kb on - strand, within MMP_RS05110at 974.243 kb on + strandat 974.243 kb on + strandat 974.249 kb on - strandat 974.365 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.413 kb on - strand, within MMP_RS05115at 974.414 kb on + strand, within MMP_RS05115at 974.415 kb on - strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.416 kb on + strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.417 kb on - strand, within MMP_RS05115at 974.418 kb on + strand, within MMP_RS05115at 974.418 kb on + strand, within MMP_RS05115at 974.418 kb on + strand, within MMP_RS05115at 974.420 kb on + strand, within MMP_RS05115at 974.623 kb on - strand, within MMP_RS05115at 974.649 kb on + strand, within MMP_RS05115at 974.936 kb on + strand, within MMP_RS05115at 974.970 kb on + strand, within MMP_RS05115at 974.970 kb on + strand, within MMP_RS05115at 975.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM
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972,423 + +0.8
972,426 - +0.3
972,427 + +0.5
972,427 + +1.2
972,435 + +0.5
972,586 + +0.9
972,586 + +0.4
972,587 - +1.0
972,587 - +0.2
972,591 - -0.1
972,591 - +0.5
972,633 - MMP_RS05105 0.10 +1.5
972,791 - MMP_RS05105 0.28 -0.4
972,842 - MMP_RS05105 0.34 -0.1
972,915 - MMP_RS05105 0.42 +1.4
972,932 + MMP_RS05105 0.44 +0.2
973,021 - MMP_RS05105 0.55 -0.2
973,042 - MMP_RS05105 0.57 +0.6
973,042 - MMP_RS05105 0.57 -0.3
973,042 - MMP_RS05105 0.57 -0.1
973,042 - MMP_RS05105 0.57 +0.1
973,042 - MMP_RS05105 0.57 +0.9
973,043 + MMP_RS05105 0.57 +0.4
973,043 + MMP_RS05105 0.57 -0.8
973,043 + MMP_RS05105 0.57 +1.4
973,043 + MMP_RS05105 0.57 -0.2
973,206 - MMP_RS05105 0.76 +0.2
973,206 - MMP_RS05105 0.76 +0.4
973,206 - MMP_RS05105 0.76 +0.6
973,210 + MMP_RS05105 0.76 +0.6
973,212 - MMP_RS05105 0.76 +0.3
973,213 + MMP_RS05105 0.76 +0.8
973,213 + MMP_RS05105 0.76 +0.3
973,217 - MMP_RS05105 0.77 +0.9
973,217 - MMP_RS05105 0.77 -0.8
973,280 + MMP_RS05105 0.84 +1.0
973,287 - MMP_RS05105 0.85 -0.9
973,287 - MMP_RS05105 0.85 -0.1
973,287 - MMP_RS05105 0.85 +0.2
973,298 - MMP_RS05105 0.86 +0.4
973,299 + MMP_RS05105 0.86 +0.3
973,300 - MMP_RS05105 0.86 +0.4
973,421 - +1.1
973,453 - -0.9
973,506 - MMP_RS05110 0.10 -0.8
973,671 + MMP_RS05110 0.31 -0.4
973,711 - MMP_RS05110 0.36 -0.8
973,712 + MMP_RS05110 0.36 +0.0
973,775 - MMP_RS05110 0.44 -1.8
973,776 + MMP_RS05110 0.44 -0.8
973,810 + MMP_RS05110 0.48 -1.7
973,854 + MMP_RS05110 0.54 -1.5
973,987 - MMP_RS05110 0.70 -0.6
973,987 - MMP_RS05110 0.70 -0.2
974,243 + -1.9
974,243 + -0.7
974,249 - -0.8
974,365 - MMP_RS05115 0.14 +0.4
974,413 - MMP_RS05115 0.20 +0.7
974,413 - MMP_RS05115 0.20 -0.5
974,413 - MMP_RS05115 0.20 +1.0
974,413 - MMP_RS05115 0.20 +0.0
974,414 + MMP_RS05115 0.20 +1.3
974,415 - MMP_RS05115 0.20 +0.9
974,416 + MMP_RS05115 0.20 +0.1
974,416 + MMP_RS05115 0.20 +0.7
974,416 + MMP_RS05115 0.20 +1.5
974,416 + MMP_RS05115 0.20 -1.0
974,417 - MMP_RS05115 0.20 +0.5
974,417 - MMP_RS05115 0.20 +0.2
974,417 - MMP_RS05115 0.20 -2.2
974,417 - MMP_RS05115 0.20 -0.3
974,418 + MMP_RS05115 0.20 -0.1
974,418 + MMP_RS05115 0.20 -0.4
974,418 + MMP_RS05115 0.20 -0.2
974,420 + MMP_RS05115 0.21 -0.3
974,623 - MMP_RS05115 0.43 +0.3
974,649 + MMP_RS05115 0.46 +0.0
974,936 + MMP_RS05115 0.79 -1.0
974,970 + MMP_RS05115 0.83 +0.4
974,970 + MMP_RS05115 0.83 -0.8
975,037 - +0.0

Or see this region's nucleotide sequence