Experiment: Formate with nitrate 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS01775 and MMP_RS01780 are separated by 160 nucleotides MMP_RS01780 and MMP_RS01785 are separated by 70 nucleotides MMP_RS01785 and MMP_RS01790 are separated by 47 nucleotides MMP_RS01790 and MMP_RS01795 are separated by 16 nucleotides
MMP_RS01775: MMP_RS01775 - TIGR00297 family protein, at 330,681 to 331,394
_RS01775
MMP_RS01780: MMP_RS01780 - TrmJ/YjtD family RNA methyltransferase, at 331,555 to 332,259
_RS01780
MMP_RS01785: MMP_RS01785 - hypothetical protein, at 332,330 to 332,743
_RS01785
MMP_RS01790: MMP_RS01790 - restriction endonuclease, at 332,791 to 333,198
_RS01790
MMP_RS01795: MMP_RS01795 - methanogenesis marker 6 protein, at 333,215 to 333,661
_RS01795
Position (kb) 331
332
333 Strain fitness (log2 ratio) -2
-1
0
1
2 at 330.598 kb on + strand at 330.599 kb on - strand at 330.603 kb on + strand at 330.604 kb on - strand at 330.604 kb on - strand at 330.628 kb on + strand at 330.756 kb on - strand, within MMP_RS01775 at 330.967 kb on - strand, within MMP_RS01775 at 331.348 kb on - strand at 331.372 kb on - strand at 331.388 kb on + strand at 331.388 kb on + strand at 331.439 kb on - strand at 331.439 kb on - strand at 331.463 kb on + strand at 331.471 kb on + strand at 331.499 kb on + strand at 331.503 kb on - strand at 331.504 kb on + strand at 331.510 kb on + strand at 331.806 kb on - strand, within MMP_RS01780 at 331.831 kb on + strand, within MMP_RS01780 at 331.884 kb on + strand, within MMP_RS01780 at 332.120 kb on - strand, within MMP_RS01780 at 332.146 kb on - strand, within MMP_RS01780 at 332.159 kb on - strand, within MMP_RS01780 at 332.159 kb on - strand, within MMP_RS01780 at 332.159 kb on - strand, within MMP_RS01780 at 332.160 kb on + strand, within MMP_RS01780 at 332.228 kb on - strand at 332.245 kb on + strand at 332.258 kb on + strand at 332.294 kb on + strand at 332.296 kb on - strand at 332.336 kb on + strand at 332.337 kb on - strand at 332.372 kb on - strand, within MMP_RS01785 at 332.547 kb on - strand, within MMP_RS01785 at 332.547 kb on - strand, within MMP_RS01785 at 332.581 kb on - strand, within MMP_RS01785 at 332.674 kb on + strand, within MMP_RS01785 at 332.696 kb on - strand, within MMP_RS01785 at 332.696 kb on - strand, within MMP_RS01785 at 332.697 kb on + strand, within MMP_RS01785 at 332.697 kb on + strand, within MMP_RS01785 at 332.700 kb on - strand, within MMP_RS01785 at 332.700 kb on - strand, within MMP_RS01785 at 332.701 kb on + strand, within MMP_RS01785 at 332.727 kb on - strand at 332.731 kb on - strand at 332.779 kb on + strand at 332.779 kb on + strand at 332.788 kb on + strand at 332.789 kb on - strand at 332.789 kb on - strand at 332.790 kb on + strand at 332.790 kb on + strand at 332.792 kb on - strand at 333.021 kb on + strand, within MMP_RS01790 at 333.023 kb on - strand, within MMP_RS01790 at 333.023 kb on - strand, within MMP_RS01790 at 333.024 kb on + strand, within MMP_RS01790 at 333.045 kb on - strand, within MMP_RS01790 at 333.089 kb on + strand, within MMP_RS01790 at 333.154 kb on - strand, within MMP_RS01790 at 333.189 kb on - strand at 333.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM remove 330,598 + +0.4 330,599 - +1.2 330,603 + +0.7 330,604 - -0.1 330,604 - +0.5 330,628 + +0.1 330,756 - MMP_RS01775 0.11 +2.2 330,967 - MMP_RS01775 0.40 +1.5 331,348 - +2.3 331,372 - +1.7 331,388 + +2.7 331,388 + +1.8 331,439 - -0.4 331,439 - -0.1 331,463 + -1.0 331,471 + -0.4 331,499 + -0.2 331,503 - +0.8 331,504 + +0.6 331,510 + +0.5 331,806 - MMP_RS01780 0.36 -2.3 331,831 + MMP_RS01780 0.39 -0.3 331,884 + MMP_RS01780 0.47 -1.0 332,120 - MMP_RS01780 0.80 -0.4 332,146 - MMP_RS01780 0.84 -1.5 332,159 - MMP_RS01780 0.86 -0.0 332,159 - MMP_RS01780 0.86 -1.0 332,159 - MMP_RS01780 0.86 -1.0 332,160 + MMP_RS01780 0.86 +0.4 332,228 - -0.8 332,245 + -0.5 332,258 + +0.7 332,294 + +0.6 332,296 - -0.8 332,336 + +0.2 332,337 - +0.5 332,372 - MMP_RS01785 0.10 +0.5 332,547 - MMP_RS01785 0.52 +0.6 332,547 - MMP_RS01785 0.52 +0.3 332,581 - MMP_RS01785 0.61 +0.6 332,674 + MMP_RS01785 0.83 -0.4 332,696 - MMP_RS01785 0.88 -1.2 332,696 - MMP_RS01785 0.88 -1.9 332,697 + MMP_RS01785 0.89 -1.1 332,697 + MMP_RS01785 0.89 -0.3 332,700 - MMP_RS01785 0.89 -0.2 332,700 - MMP_RS01785 0.89 -1.1 332,701 + MMP_RS01785 0.90 +0.2 332,727 - -0.3 332,731 - -2.2 332,779 + +1.0 332,779 + -0.1 332,788 + -2.6 332,789 - +0.1 332,789 - +0.3 332,790 + -0.1 332,790 + +0.3 332,792 - +1.9 333,021 + MMP_RS01790 0.56 +0.5 333,023 - MMP_RS01790 0.57 -0.8 333,023 - MMP_RS01790 0.57 -2.0 333,024 + MMP_RS01790 0.57 +0.9 333,045 - MMP_RS01790 0.62 -1.4 333,089 + MMP_RS01790 0.73 +0.1 333,154 - MMP_RS01790 0.89 +0.2 333,189 - -0.2 333,213 + +0.8
Or see this region's nucleotide sequence