Strain Fitness in Methanococcus maripaludis S2 around MMP_RS01635

Experiment: Formate with nitrate 62.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS01625 and MMP_RS01630 are separated by 65 nucleotidesMMP_RS01630 and MMP_RS01635 are separated by 46 nucleotidesMMP_RS01635 and MMP_RS01640 are separated by 5 nucleotides MMP_RS01625: MMP_RS01625 - rubredoxin, at 301,467 to 301,604 _RS01625 MMP_RS01630: MMP_RS01630 - N-glycosylase/DNA lyase, at 301,670 to 302,428 _RS01630 MMP_RS01635: MMP_RS01635 - thiamine pyrophosphate-dependent enzyme, at 302,475 to 303,335 _RS01635 MMP_RS01640: MMP_RS01640 - 2-oxoacid:acceptor oxidoreductase subunit alpha, at 303,341 to 305,053 _RS01640 Position (kb) 302 303 304Strain fitness (log2 ratio) -2 -1 0 1at 301.530 kb on - strand, within MMP_RS01625at 301.568 kb on + strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.569 kb on - strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.570 kb on + strand, within MMP_RS01625at 301.582 kb on + strand, within MMP_RS01625at 301.604 kb on - strandat 301.604 kb on - strandat 301.642 kb on - strandat 301.651 kb on + strandat 301.671 kb on - strandat 301.672 kb on + strandat 301.692 kb on + strandat 301.777 kb on - strand, within MMP_RS01630at 302.105 kb on - strand, within MMP_RS01630at 302.233 kb on - strand, within MMP_RS01630at 302.237 kb on + strand, within MMP_RS01630at 302.252 kb on - strand, within MMP_RS01630at 302.338 kb on - strand, within MMP_RS01630at 302.408 kb on - strandat 302.447 kb on - strandat 302.455 kb on + strandat 302.459 kb on + strandat 302.558 kb on + strandat 302.702 kb on + strand, within MMP_RS01635at 302.748 kb on - strand, within MMP_RS01635at 302.755 kb on + strand, within MMP_RS01635at 302.958 kb on + strand, within MMP_RS01635at 302.966 kb on + strand, within MMP_RS01635at 302.966 kb on + strand, within MMP_RS01635at 302.985 kb on - strand, within MMP_RS01635at 303.047 kb on + strand, within MMP_RS01635at 303.301 kb on + strandat 303.449 kb on - strandat 303.612 kb on - strand, within MMP_RS01640at 304.001 kb on + strand, within MMP_RS01640at 304.051 kb on + strand, within MMP_RS01640at 304.052 kb on - strand, within MMP_RS01640at 304.092 kb on + strand, within MMP_RS01640at 304.160 kb on - strand, within MMP_RS01640at 304.163 kb on - strand, within MMP_RS01640at 304.284 kb on + strand, within MMP_RS01640at 304.284 kb on + strand, within MMP_RS01640at 304.313 kb on - strand, within MMP_RS01640

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM
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301,530 - MMP_RS01625 0.46 +0.4
301,568 + MMP_RS01625 0.73 +0.1
301,569 - MMP_RS01625 0.74 -0.2
301,569 - MMP_RS01625 0.74 -1.1
301,569 - MMP_RS01625 0.74 -0.8
301,569 - MMP_RS01625 0.74 -0.7
301,569 - MMP_RS01625 0.74 +0.9
301,569 - MMP_RS01625 0.74 +0.6
301,569 - MMP_RS01625 0.74 +1.1
301,569 - MMP_RS01625 0.74 -0.1
301,569 - MMP_RS01625 0.74 -0.1
301,569 - MMP_RS01625 0.74 +1.6
301,569 - MMP_RS01625 0.74 +0.0
301,569 - MMP_RS01625 0.74 +1.0
301,569 - MMP_RS01625 0.74 -0.1
301,569 - MMP_RS01625 0.74 -0.3
301,569 - MMP_RS01625 0.74 -0.8
301,569 - MMP_RS01625 0.74 +1.0
301,569 - MMP_RS01625 0.74 +1.0
301,570 + MMP_RS01625 0.75 +1.4
301,570 + MMP_RS01625 0.75 -0.8
301,570 + MMP_RS01625 0.75 +0.5
301,570 + MMP_RS01625 0.75 +0.0
301,570 + MMP_RS01625 0.75 +0.3
301,570 + MMP_RS01625 0.75 +0.5
301,570 + MMP_RS01625 0.75 +1.0
301,570 + MMP_RS01625 0.75 -0.2
301,570 + MMP_RS01625 0.75 +0.5
301,570 + MMP_RS01625 0.75 +0.2
301,570 + MMP_RS01625 0.75 +0.1
301,582 + MMP_RS01625 0.83 +0.1
301,604 - -0.6
301,604 - -0.5
301,642 - +0.3
301,651 + +0.0
301,671 - -0.7
301,672 + +0.8
301,692 + -0.8
301,777 - MMP_RS01630 0.14 -1.0
302,105 - MMP_RS01630 0.57 -0.0
302,233 - MMP_RS01630 0.74 -1.1
302,237 + MMP_RS01630 0.75 -0.0
302,252 - MMP_RS01630 0.77 -0.4
302,338 - MMP_RS01630 0.88 -1.5
302,408 - +0.3
302,447 - -0.7
302,455 + -1.3
302,459 + +0.1
302,558 + -1.4
302,702 + MMP_RS01635 0.26 +0.2
302,748 - MMP_RS01635 0.32 -0.6
302,755 + MMP_RS01635 0.33 -0.4
302,958 + MMP_RS01635 0.56 -1.0
302,966 + MMP_RS01635 0.57 -1.0
302,966 + MMP_RS01635 0.57 -0.4
302,985 - MMP_RS01635 0.59 -0.8
303,047 + MMP_RS01635 0.66 -0.7
303,301 + -1.8
303,449 - +0.0
303,612 - MMP_RS01640 0.16 +0.8
304,001 + MMP_RS01640 0.39 +0.1
304,051 + MMP_RS01640 0.41 +0.7
304,052 - MMP_RS01640 0.42 -0.3
304,092 + MMP_RS01640 0.44 +1.0
304,160 - MMP_RS01640 0.48 -0.9
304,163 - MMP_RS01640 0.48 +0.9
304,284 + MMP_RS01640 0.55 +0.6
304,284 + MMP_RS01640 0.55 -0.0
304,313 - MMP_RS01640 0.57 -0.2

Or see this region's nucleotide sequence