Experiment: Formate with nitrate 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00645 and MMP_RS00650 overlap by 10 nucleotides MMP_RS00650 and MMP_RS00655 are separated by 3 nucleotides MMP_RS00655 and MMP_RS00660 are separated by 7 nucleotides
MMP_RS00645: MMP_RS00645 - iron ABC transporter permease, at 117,416 to 119,032
_RS00645
MMP_RS00650: MMP_RS00650 - ABC transporter ATP-binding protein, at 119,023 to 119,991
_RS00650
MMP_RS00655: MMP_RS00655 - hypothetical protein, at 119,995 to 120,534
_RS00655
MMP_RS00660: MMP_RS00660 - alkaline phosphatase family protein, at 120,542 to 121,822
_RS00660
Position (kb) 119
120
121 Strain fitness (log2 ratio) -1
0
1
2 at 119.214 kb on - strand, within MMP_RS00650 at 119.462 kb on - strand, within MMP_RS00650 at 119.463 kb on + strand, within MMP_RS00650 at 119.681 kb on + strand, within MMP_RS00650 at 119.748 kb on + strand, within MMP_RS00650 at 119.875 kb on - strand, within MMP_RS00650 at 119.875 kb on - strand, within MMP_RS00650 at 119.876 kb on + strand, within MMP_RS00650 at 119.888 kb on + strand, within MMP_RS00650 at 119.976 kb on - strand at 119.978 kb on - strand at 119.993 kb on - strand at 120.105 kb on - strand, within MMP_RS00655 at 120.247 kb on - strand, within MMP_RS00655 at 120.612 kb on - strand at 120.612 kb on - strand at 120.613 kb on + strand at 120.674 kb on - strand, within MMP_RS00660 at 120.674 kb on - strand, within MMP_RS00660 at 120.675 kb on + strand, within MMP_RS00660 at 120.675 kb on + strand, within MMP_RS00660 at 120.675 kb on + strand, within MMP_RS00660 at 120.726 kb on + strand, within MMP_RS00660 at 120.726 kb on + strand, within MMP_RS00660 at 120.818 kb on + strand, within MMP_RS00660 at 120.905 kb on + strand, within MMP_RS00660 at 121.108 kb on - strand, within MMP_RS00660 at 121.129 kb on - strand, within MMP_RS00660 at 121.370 kb on - strand, within MMP_RS00660 at 121.406 kb on - strand, within MMP_RS00660 at 121.449 kb on + strand, within MMP_RS00660 at 121.478 kb on + strand, within MMP_RS00660 at 121.478 kb on + strand, within MMP_RS00660 at 121.483 kb on - strand, within MMP_RS00660
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM remove 119,214 - MMP_RS00650 0.20 -0.3 119,462 - MMP_RS00650 0.45 +0.9 119,463 + MMP_RS00650 0.45 +0.8 119,681 + MMP_RS00650 0.68 +0.0 119,748 + MMP_RS00650 0.75 -0.3 119,875 - MMP_RS00650 0.88 -0.0 119,875 - MMP_RS00650 0.88 -0.5 119,876 + MMP_RS00650 0.88 -0.2 119,888 + MMP_RS00650 0.89 -0.3 119,976 - -0.7 119,978 - +0.3 119,993 - +2.3 120,105 - MMP_RS00655 0.20 -0.9 120,247 - MMP_RS00655 0.47 -0.3 120,612 - -1.5 120,612 - +0.6 120,613 + -0.5 120,674 - MMP_RS00660 0.10 +1.3 120,674 - MMP_RS00660 0.10 -0.2 120,675 + MMP_RS00660 0.10 -0.8 120,675 + MMP_RS00660 0.10 +0.1 120,675 + MMP_RS00660 0.10 -0.1 120,726 + MMP_RS00660 0.14 -0.3 120,726 + MMP_RS00660 0.14 +0.0 120,818 + MMP_RS00660 0.22 -0.6 120,905 + MMP_RS00660 0.28 +2.3 121,108 - MMP_RS00660 0.44 +0.4 121,129 - MMP_RS00660 0.46 -1.1 121,370 - MMP_RS00660 0.65 +0.4 121,406 - MMP_RS00660 0.67 +0.5 121,449 + MMP_RS00660 0.71 +0.6 121,478 + MMP_RS00660 0.73 -0.5 121,478 + MMP_RS00660 0.73 -0.2 121,483 - MMP_RS00660 0.73 -0.9
Or see this region's nucleotide sequence