Experiment: Formate with nitrate 62.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS00150 and MMP_RS00155 are separated by 53 nucleotides MMP_RS00155 and MMP_RS00160 are separated by 67 nucleotides
MMP_RS00150: MMP_RS00150 - AAA family ATPase, at 31,747 to 32,862
_RS00150
MMP_RS00155: MMP_RS00155 - heavy metal-binding domain-containing protein, at 32,916 to 33,188
_RS00155
MMP_RS00160: MMP_RS00160 - DNA polymerase II large subunit, at 33,256 to 36,651
_RS00160
Position (kb) 32
33
34 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 32.007 kb on - strand, within MMP_RS00150 at 32.061 kb on + strand, within MMP_RS00150 at 32.065 kb on + strand, within MMP_RS00150 at 32.176 kb on - strand, within MMP_RS00150 at 32.225 kb on - strand, within MMP_RS00150 at 32.304 kb on + strand, within MMP_RS00150 at 32.304 kb on + strand, within MMP_RS00150 at 32.304 kb on + strand, within MMP_RS00150 at 32.402 kb on - strand, within MMP_RS00150 at 32.474 kb on - strand, within MMP_RS00150 at 32.475 kb on + strand, within MMP_RS00150 at 32.860 kb on - strand at 32.909 kb on - strand at 32.918 kb on + strand at 32.947 kb on - strand, within MMP_RS00155 at 32.953 kb on - strand, within MMP_RS00155 at 33.015 kb on - strand, within MMP_RS00155 at 33.016 kb on + strand, within MMP_RS00155 at 33.016 kb on + strand, within MMP_RS00155 at 33.016 kb on + strand, within MMP_RS00155 at 33.217 kb on - strand at 33.231 kb on + strand at 33.232 kb on - strand at 33.232 kb on - strand at 33.233 kb on + strand at 33.233 kb on + strand at 33.233 kb on + strand at 33.234 kb on - strand at 33.235 kb on + strand at 33.666 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate with nitrate 62.5 mM remove 32,007 - MMP_RS00150 0.23 -0.1 32,061 + MMP_RS00150 0.28 +0.7 32,065 + MMP_RS00150 0.28 +1.4 32,176 - MMP_RS00150 0.38 +0.8 32,225 - MMP_RS00150 0.43 +0.1 32,304 + MMP_RS00150 0.50 +0.0 32,304 + MMP_RS00150 0.50 -0.1 32,304 + MMP_RS00150 0.50 +1.8 32,402 - MMP_RS00150 0.59 +1.0 32,474 - MMP_RS00150 0.65 -0.9 32,475 + MMP_RS00150 0.65 +0.9 32,860 - +0.5 32,909 - -0.0 32,918 + +0.2 32,947 - MMP_RS00155 0.11 -0.8 32,953 - MMP_RS00155 0.14 -1.5 33,015 - MMP_RS00155 0.36 -1.0 33,016 + MMP_RS00155 0.37 -0.6 33,016 + MMP_RS00155 0.37 -0.7 33,016 + MMP_RS00155 0.37 -0.1 33,217 - -0.2 33,231 + -1.9 33,232 - -1.3 33,232 - +0.1 33,233 + -1.0 33,233 + -0.4 33,233 + -0.1 33,234 - -0.6 33,235 + +0.3 33,666 - -2.9
Or see this region's nucleotide sequence