Experiment: D-Glucosamine Hydrochloride 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS03185 and LRK54_RS03190 are separated by 127 nucleotides LRK54_RS03190 and LRK54_RS03195 are separated by 51 nucleotides LRK54_RS03195 and LRK54_RS03200 overlap by 20 nucleotides LRK54_RS03200 and LRK54_RS03205 are separated by 1 nucleotides
LRK54_RS03185: LRK54_RS03185 - phosphoglycerate dehydrogenase, at 686,354 to 687,586
_RS03185
LRK54_RS03190: LRK54_RS03190 - tRNA-Pro, at 687,714 to 687,790
_RS03190
LRK54_RS03195: LRK54_RS03195 - MerR family transcriptional regulator, at 687,842 to 688,198
_RS03195
LRK54_RS03200: LRK54_RS03200 - integration host factor subunit alpha, at 688,179 to 688,478
_RS03200
LRK54_RS03205: LRK54_RS03205 - phenylalanine--tRNA ligase subunit beta, at 688,480 to 690,858
_RS03205
Position (kb) 687
688 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 686.789 kb on + strand, within LRK54_RS03185 at 686.789 kb on + strand, within LRK54_RS03185 at 686.789 kb on + strand, within LRK54_RS03185 at 686.789 kb on + strand, within LRK54_RS03185 at 686.789 kb on + strand, within LRK54_RS03185 at 686.789 kb on + strand, within LRK54_RS03185 at 686.789 kb on + strand, within LRK54_RS03185 at 686.789 kb on + strand, within LRK54_RS03185 at 686.789 kb on + strand, within LRK54_RS03185 at 686.789 kb on + strand, within LRK54_RS03185 at 686.790 kb on - strand, within LRK54_RS03185 at 686.790 kb on - strand, within LRK54_RS03185 at 686.790 kb on - strand, within LRK54_RS03185 at 686.790 kb on - strand, within LRK54_RS03185 at 686.790 kb on - strand, within LRK54_RS03185 at 686.790 kb on - strand, within LRK54_RS03185 at 686.790 kb on - strand, within LRK54_RS03185 at 686.790 kb on - strand, within LRK54_RS03185 at 686.790 kb on - strand, within LRK54_RS03185 at 686.825 kb on + strand, within LRK54_RS03185 at 687.293 kb on + strand, within LRK54_RS03185 at 687.294 kb on - strand, within LRK54_RS03185 at 687.294 kb on - strand, within LRK54_RS03185 at 687.294 kb on - strand, within LRK54_RS03185 at 687.485 kb on + strand at 687.485 kb on + strand at 687.485 kb on + strand at 687.486 kb on - strand at 687.486 kb on - strand at 687.486 kb on - strand at 687.486 kb on - strand at 687.486 kb on - strand at 687.486 kb on - strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.581 kb on + strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.582 kb on - strand at 687.794 kb on - strand at 687.794 kb on - strand at 687.794 kb on - strand at 687.812 kb on + strand at 687.812 kb on + strand at 687.813 kb on - strand at 687.813 kb on - strand at 687.813 kb on - strand at 687.813 kb on - strand at 688.199 kb on - strand at 688.199 kb on - strand at 688.199 kb on - strand at 688.199 kb on - strand at 688.199 kb on - strand at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.212 kb on + strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.213 kb on - strand, within LRK54_RS03200 at 688.390 kb on + strand, within LRK54_RS03200 at 688.390 kb on + strand, within LRK54_RS03200 at 688.390 kb on + strand, within LRK54_RS03200 at 688.391 kb on - strand, within LRK54_RS03200 at 688.391 kb on - strand, within LRK54_RS03200 at 688.391 kb on - strand, within LRK54_RS03200 at 688.391 kb on - strand, within LRK54_RS03200 at 688.391 kb on - strand, within LRK54_RS03200
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 20 mM remove 686,789 + LRK54_RS03185 0.35 -0.8 686,789 + LRK54_RS03185 0.35 -2.3 686,789 + LRK54_RS03185 0.35 +0.5 686,789 + LRK54_RS03185 0.35 -1.5 686,789 + LRK54_RS03185 0.35 -3.6 686,789 + LRK54_RS03185 0.35 -1.7 686,789 + LRK54_RS03185 0.35 -2.6 686,789 + LRK54_RS03185 0.35 -3.7 686,789 + LRK54_RS03185 0.35 -2.9 686,789 + LRK54_RS03185 0.35 -3.0 686,790 - LRK54_RS03185 0.35 -0.8 686,790 - LRK54_RS03185 0.35 -3.6 686,790 - LRK54_RS03185 0.35 -2.5 686,790 - LRK54_RS03185 0.35 -2.1 686,790 - LRK54_RS03185 0.35 -2.7 686,790 - LRK54_RS03185 0.35 -1.9 686,790 - LRK54_RS03185 0.35 -1.1 686,790 - LRK54_RS03185 0.35 -1.0 686,790 - LRK54_RS03185 0.35 -1.1 686,825 + LRK54_RS03185 0.38 -2.5 687,293 + LRK54_RS03185 0.76 -1.4 687,294 - LRK54_RS03185 0.76 -4.4 687,294 - LRK54_RS03185 0.76 -0.1 687,294 - LRK54_RS03185 0.76 -0.5 687,485 + -3.7 687,485 + -1.1 687,485 + -1.1 687,486 - -4.2 687,486 - -1.8 687,486 - -2.2 687,486 - -2.1 687,486 - -3.6 687,486 - -2.2 687,581 + -3.0 687,581 + -1.5 687,581 + -2.1 687,581 + -0.6 687,581 + -2.6 687,581 + -1.5 687,581 + -2.6 687,581 + -0.5 687,581 + -1.3 687,581 + -1.5 687,581 + -0.8 687,581 + -1.1 687,581 + -3.0 687,581 + -1.1 687,581 + -1.7 687,581 + -2.5 687,581 + -2.2 687,581 + -1.6 687,581 + -3.6 687,581 + -0.8 687,581 + -2.4 687,581 + -0.8 687,581 + -1.0 687,581 + -2.4 687,581 + -2.0 687,581 + -2.7 687,581 + -2.0 687,581 + -2.1 687,581 + -1.2 687,581 + -3.5 687,581 + -1.2 687,581 + -1.5 687,581 + -0.1 687,581 + -1.1 687,581 + -2.5 687,581 + -2.3 687,581 + -1.4 687,581 + -3.8 687,581 + -1.7 687,582 - -0.1 687,582 - -2.3 687,582 - -2.7 687,582 - -1.7 687,582 - -3.6 687,582 - -0.7 687,582 - -1.6 687,582 - -1.3 687,582 - -3.7 687,582 - -2.0 687,582 - -1.2 687,582 - -1.6 687,582 - -3.0 687,582 - -1.7 687,582 - -1.0 687,582 - -1.7 687,582 - -1.3 687,582 - -1.5 687,582 - -0.3 687,582 - -1.1 687,582 - -1.2 687,582 - -2.4 687,582 - -1.1 687,582 - -2.0 687,582 - -1.1 687,582 - -2.4 687,582 - -1.5 687,582 - -2.0 687,582 - -1.4 687,582 - -2.2 687,582 - -1.0 687,794 - -0.2 687,794 - -0.4 687,794 - +0.1 687,812 + +0.9 687,812 + -1.6 687,813 - -0.1 687,813 - -0.5 687,813 - -0.1 687,813 - -0.3 688,199 - -0.1 688,199 - +0.3 688,199 - +0.1 688,199 - +0.5 688,199 - -0.2 688,212 + LRK54_RS03200 0.11 +0.2 688,212 + LRK54_RS03200 0.11 -1.5 688,212 + LRK54_RS03200 0.11 -1.6 688,212 + LRK54_RS03200 0.11 -0.8 688,212 + LRK54_RS03200 0.11 -0.8 688,212 + LRK54_RS03200 0.11 -0.8 688,212 + LRK54_RS03200 0.11 -2.0 688,212 + LRK54_RS03200 0.11 -0.3 688,212 + LRK54_RS03200 0.11 -0.1 688,212 + LRK54_RS03200 0.11 -0.7 688,212 + LRK54_RS03200 0.11 -0.8 688,212 + LRK54_RS03200 0.11 -1.8 688,212 + LRK54_RS03200 0.11 -0.4 688,213 - LRK54_RS03200 0.11 +2.0 688,213 - LRK54_RS03200 0.11 +0.6 688,213 - LRK54_RS03200 0.11 +0.3 688,213 - LRK54_RS03200 0.11 +0.0 688,213 - LRK54_RS03200 0.11 +0.1 688,213 - LRK54_RS03200 0.11 +0.7 688,213 - LRK54_RS03200 0.11 -1.3 688,213 - LRK54_RS03200 0.11 -0.4 688,213 - LRK54_RS03200 0.11 -0.7 688,213 - LRK54_RS03200 0.11 -0.5 688,213 - LRK54_RS03200 0.11 -0.5 688,213 - LRK54_RS03200 0.11 -0.7 688,213 - LRK54_RS03200 0.11 -0.4 688,213 - LRK54_RS03200 0.11 +0.1 688,213 - LRK54_RS03200 0.11 -0.8 688,213 - LRK54_RS03200 0.11 +0.3 688,213 - LRK54_RS03200 0.11 -0.3 688,213 - LRK54_RS03200 0.11 -0.1 688,213 - LRK54_RS03200 0.11 -0.3 688,213 - LRK54_RS03200 0.11 -0.1 688,213 - LRK54_RS03200 0.11 -1.5 688,213 - LRK54_RS03200 0.11 -0.7 688,213 - LRK54_RS03200 0.11 -1.3 688,213 - LRK54_RS03200 0.11 -0.9 688,390 + LRK54_RS03200 0.70 +0.8 688,390 + LRK54_RS03200 0.70 +0.5 688,390 + LRK54_RS03200 0.70 -1.1 688,391 - LRK54_RS03200 0.71 -0.1 688,391 - LRK54_RS03200 0.71 -0.8 688,391 - LRK54_RS03200 0.71 +0.5 688,391 - LRK54_RS03200 0.71 -0.7 688,391 - LRK54_RS03200 0.71 -1.7
Or see this region's nucleotide sequence