Experiment: D-Glucosamine Hydrochloride 20 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS01125 and LRK54_RS01130 overlap by 10 nucleotides LRK54_RS01130 and LRK54_RS01135 are separated by 269 nucleotides LRK54_RS01135 and LRK54_RS01140 are separated by 118 nucleotides
LRK54_RS01125: LRK54_RS01125 - NADH-quinone oxidoreductase subunit B, at 251,590 to 252,147
_RS01125
LRK54_RS01130: LRK54_RS01130 - NADH-quinone oxidoreductase subunit A, at 252,138 to 252,494
_RS01130
LRK54_RS01135: LRK54_RS01135 - PilZ domain-containing protein, at 252,764 to 253,117
_RS01135
LRK54_RS01140: LRK54_RS01140 - EAL domain-containing protein, at 253,236 to 256,079
_RS01140
Position (kb) 252
253
254 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 252.505 kb on - strand at 252.505 kb on - strand at 252.505 kb on - strand at 252.505 kb on - strand at 252.505 kb on - strand at 252.505 kb on - strand at 252.505 kb on - strand at 252.505 kb on - strand at 252.505 kb on - strand at 252.505 kb on - strand at 252.505 kb on - strand at 252.505 kb on - strand at 252.626 kb on - strand at 252.626 kb on - strand at 252.626 kb on - strand at 252.677 kb on + strand at 252.677 kb on + strand at 252.677 kb on + strand at 252.677 kb on + strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.678 kb on - strand at 252.800 kb on - strand, within LRK54_RS01135 at 252.993 kb on + strand, within LRK54_RS01135 at 252.993 kb on + strand, within LRK54_RS01135 at 252.993 kb on + strand, within LRK54_RS01135 at 252.993 kb on + strand, within LRK54_RS01135 at 252.993 kb on + strand, within LRK54_RS01135 at 252.993 kb on + strand, within LRK54_RS01135 at 252.994 kb on - strand, within LRK54_RS01135 at 252.994 kb on - strand, within LRK54_RS01135 at 252.994 kb on - strand, within LRK54_RS01135 at 252.994 kb on - strand, within LRK54_RS01135 at 252.994 kb on - strand, within LRK54_RS01135 at 252.994 kb on - strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.044 kb on + strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.045 kb on - strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.053 kb on + strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.054 kb on - strand, within LRK54_RS01135 at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.167 kb on + strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.168 kb on - strand at 253.726 kb on + strand, within LRK54_RS01140 at 253.726 kb on + strand, within LRK54_RS01140 at 253.726 kb on + strand, within LRK54_RS01140 at 253.727 kb on - strand, within LRK54_RS01140 at 253.727 kb on - strand, within LRK54_RS01140 at 253.727 kb on - strand, within LRK54_RS01140 at 253.727 kb on - strand, within LRK54_RS01140 at 253.864 kb on + strand, within LRK54_RS01140 at 253.864 kb on + strand, within LRK54_RS01140 at 253.864 kb on + strand, within LRK54_RS01140 at 253.864 kb on + strand, within LRK54_RS01140 at 253.864 kb on + strand, within LRK54_RS01140 at 253.864 kb on + strand, within LRK54_RS01140 at 253.865 kb on - strand, within LRK54_RS01140 at 253.865 kb on - strand, within LRK54_RS01140 at 253.865 kb on - strand, within LRK54_RS01140 at 253.865 kb on - strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.005 kb on + strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.006 kb on - strand, within LRK54_RS01140 at 254.113 kb on + strand, within LRK54_RS01140 at 254.113 kb on + strand, within LRK54_RS01140 at 254.113 kb on + strand, within LRK54_RS01140 at 254.113 kb on + strand, within LRK54_RS01140 at 254.114 kb on - strand, within LRK54_RS01140 at 254.114 kb on - strand, within LRK54_RS01140 at 254.114 kb on - strand, within LRK54_RS01140
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 20 mM remove 252,505 - +0.2 252,505 - -0.1 252,505 - +0.1 252,505 - +0.9 252,505 - -0.3 252,505 - +0.5 252,505 - +0.1 252,505 - -0.6 252,505 - +1.5 252,505 - -0.5 252,505 - -0.3 252,505 - +0.5 252,626 - -1.1 252,626 - +2.1 252,626 - +0.9 252,677 + -0.3 252,677 + -0.6 252,677 + -0.5 252,677 + +0.7 252,678 - -0.6 252,678 - -0.1 252,678 - +1.8 252,678 - -0.2 252,678 - +1.0 252,678 - -0.1 252,678 - -0.2 252,678 - +0.6 252,678 - -0.1 252,678 - +0.0 252,678 - -0.1 252,678 - +0.9 252,678 - -0.3 252,678 - +0.4 252,678 - -0.2 252,678 - +1.3 252,678 - +0.4 252,678 - +0.5 252,678 - -0.1 252,678 - -0.4 252,678 - +0.4 252,678 - +0.9 252,678 - -0.3 252,678 - +0.7 252,678 - +0.8 252,678 - +0.4 252,678 - +0.4 252,678 - +0.6 252,678 - +0.2 252,800 - LRK54_RS01135 0.10 +1.5 252,993 + LRK54_RS01135 0.65 +1.7 252,993 + LRK54_RS01135 0.65 +1.5 252,993 + LRK54_RS01135 0.65 +1.7 252,993 + LRK54_RS01135 0.65 +1.0 252,993 + LRK54_RS01135 0.65 +0.5 252,993 + LRK54_RS01135 0.65 +1.1 252,994 - LRK54_RS01135 0.65 +1.4 252,994 - LRK54_RS01135 0.65 +1.6 252,994 - LRK54_RS01135 0.65 +0.4 252,994 - LRK54_RS01135 0.65 +1.9 252,994 - LRK54_RS01135 0.65 +0.4 252,994 - LRK54_RS01135 0.65 +0.9 253,044 + LRK54_RS01135 0.79 +0.8 253,044 + LRK54_RS01135 0.79 +1.0 253,044 + LRK54_RS01135 0.79 +0.9 253,044 + LRK54_RS01135 0.79 +1.0 253,044 + LRK54_RS01135 0.79 -0.1 253,044 + LRK54_RS01135 0.79 +1.3 253,044 + LRK54_RS01135 0.79 +1.4 253,044 + LRK54_RS01135 0.79 +2.3 253,044 + LRK54_RS01135 0.79 +1.0 253,044 + LRK54_RS01135 0.79 +1.7 253,044 + LRK54_RS01135 0.79 +0.7 253,044 + LRK54_RS01135 0.79 +1.4 253,044 + LRK54_RS01135 0.79 +0.2 253,044 + LRK54_RS01135 0.79 +2.6 253,044 + LRK54_RS01135 0.79 +1.1 253,044 + LRK54_RS01135 0.79 +1.2 253,044 + LRK54_RS01135 0.79 +1.5 253,044 + LRK54_RS01135 0.79 +1.8 253,044 + LRK54_RS01135 0.79 +1.4 253,044 + LRK54_RS01135 0.79 +1.0 253,044 + LRK54_RS01135 0.79 +1.2 253,044 + LRK54_RS01135 0.79 +1.2 253,044 + LRK54_RS01135 0.79 +0.8 253,044 + LRK54_RS01135 0.79 +0.9 253,044 + LRK54_RS01135 0.79 +0.9 253,044 + LRK54_RS01135 0.79 +1.6 253,044 + LRK54_RS01135 0.79 +1.2 253,044 + LRK54_RS01135 0.79 +0.3 253,044 + LRK54_RS01135 0.79 +0.9 253,045 - LRK54_RS01135 0.79 +1.4 253,045 - LRK54_RS01135 0.79 -1.1 253,045 - LRK54_RS01135 0.79 +1.0 253,045 - LRK54_RS01135 0.79 +1.2 253,045 - LRK54_RS01135 0.79 +2.1 253,045 - LRK54_RS01135 0.79 +1.6 253,045 - LRK54_RS01135 0.79 +1.1 253,045 - LRK54_RS01135 0.79 +1.2 253,045 - LRK54_RS01135 0.79 +1.3 253,045 - LRK54_RS01135 0.79 +0.9 253,045 - LRK54_RS01135 0.79 +0.7 253,045 - LRK54_RS01135 0.79 +1.1 253,045 - LRK54_RS01135 0.79 +1.0 253,045 - LRK54_RS01135 0.79 +1.8 253,045 - LRK54_RS01135 0.79 +1.0 253,045 - LRK54_RS01135 0.79 +1.2 253,045 - LRK54_RS01135 0.79 +0.8 253,045 - LRK54_RS01135 0.79 +0.9 253,045 - LRK54_RS01135 0.79 +1.4 253,045 - LRK54_RS01135 0.79 +1.1 253,045 - LRK54_RS01135 0.79 +1.5 253,045 - LRK54_RS01135 0.79 +0.7 253,045 - LRK54_RS01135 0.79 +1.1 253,045 - LRK54_RS01135 0.79 +1.0 253,045 - LRK54_RS01135 0.79 +0.5 253,053 + LRK54_RS01135 0.82 +1.3 253,053 + LRK54_RS01135 0.82 +0.8 253,053 + LRK54_RS01135 0.82 +1.2 253,053 + LRK54_RS01135 0.82 +2.0 253,053 + LRK54_RS01135 0.82 +1.0 253,053 + LRK54_RS01135 0.82 +0.4 253,053 + LRK54_RS01135 0.82 +0.7 253,053 + LRK54_RS01135 0.82 +1.5 253,053 + LRK54_RS01135 0.82 +0.7 253,053 + LRK54_RS01135 0.82 +1.2 253,053 + LRK54_RS01135 0.82 +1.1 253,053 + LRK54_RS01135 0.82 +1.5 253,053 + LRK54_RS01135 0.82 +0.8 253,054 - LRK54_RS01135 0.82 +0.7 253,054 - LRK54_RS01135 0.82 +0.6 253,054 - LRK54_RS01135 0.82 +1.8 253,054 - LRK54_RS01135 0.82 +1.1 253,054 - LRK54_RS01135 0.82 +1.0 253,054 - LRK54_RS01135 0.82 +1.9 253,054 - LRK54_RS01135 0.82 +1.5 253,054 - LRK54_RS01135 0.82 +0.7 253,054 - LRK54_RS01135 0.82 +1.0 253,054 - LRK54_RS01135 0.82 -0.2 253,054 - LRK54_RS01135 0.82 +0.4 253,054 - LRK54_RS01135 0.82 +0.2 253,054 - LRK54_RS01135 0.82 +0.9 253,054 - LRK54_RS01135 0.82 +0.8 253,167 + +0.3 253,167 + +0.2 253,167 + +0.5 253,167 + +0.2 253,167 + -0.1 253,167 + +0.5 253,167 + -0.8 253,167 + -0.1 253,167 + +0.2 253,167 + -0.5 253,167 + +0.9 253,167 + -0.2 253,167 + +0.0 253,167 + +0.1 253,167 + -1.3 253,167 + +0.2 253,167 + -0.6 253,167 + -1.1 253,167 + +2.8 253,167 + -0.6 253,167 + +0.3 253,167 + +1.2 253,167 + -1.6 253,167 + -0.2 253,167 + -0.4 253,167 + +0.4 253,167 + -0.3 253,167 + +0.2 253,168 - +0.5 253,168 - -0.3 253,168 - +0.1 253,168 - +1.5 253,168 - -0.4 253,168 - -0.2 253,168 - +0.3 253,168 - +1.5 253,168 - -1.2 253,168 - -0.7 253,168 - -0.2 253,168 - +0.9 253,168 - +0.4 253,168 - +0.7 253,168 - +0.4 253,168 - -0.3 253,168 - -1.3 253,168 - +0.5 253,168 - -0.1 253,168 - +0.3 253,168 - -2.2 253,168 - +0.6 253,168 - +0.6 253,168 - -1.1 253,168 - -0.7 253,168 - +0.1 253,168 - +0.4 253,168 - -1.6 253,168 - -0.1 253,168 - -0.5 253,726 + LRK54_RS01140 0.17 +1.5 253,726 + LRK54_RS01140 0.17 -0.4 253,726 + LRK54_RS01140 0.17 -0.2 253,727 - LRK54_RS01140 0.17 -0.8 253,727 - LRK54_RS01140 0.17 -0.1 253,727 - LRK54_RS01140 0.17 +0.1 253,727 - LRK54_RS01140 0.17 +1.8 253,864 + LRK54_RS01140 0.22 -1.5 253,864 + LRK54_RS01140 0.22 +0.2 253,864 + LRK54_RS01140 0.22 +0.2 253,864 + LRK54_RS01140 0.22 +1.5 253,864 + LRK54_RS01140 0.22 -1.5 253,864 + LRK54_RS01140 0.22 -0.4 253,865 - LRK54_RS01140 0.22 +1.1 253,865 - LRK54_RS01140 0.22 +0.5 253,865 - LRK54_RS01140 0.22 +1.5 253,865 - LRK54_RS01140 0.22 -0.5 254,005 + LRK54_RS01140 0.27 +0.5 254,005 + LRK54_RS01140 0.27 +0.5 254,005 + LRK54_RS01140 0.27 +1.0 254,005 + LRK54_RS01140 0.27 +0.3 254,005 + LRK54_RS01140 0.27 -1.0 254,005 + LRK54_RS01140 0.27 +0.1 254,005 + LRK54_RS01140 0.27 +0.8 254,005 + LRK54_RS01140 0.27 +0.9 254,005 + LRK54_RS01140 0.27 -0.1 254,005 + LRK54_RS01140 0.27 +1.1 254,005 + LRK54_RS01140 0.27 -0.1 254,006 - LRK54_RS01140 0.27 -0.9 254,006 - LRK54_RS01140 0.27 +0.9 254,006 - LRK54_RS01140 0.27 -0.5 254,006 - LRK54_RS01140 0.27 +0.3 254,006 - LRK54_RS01140 0.27 -0.1 254,006 - LRK54_RS01140 0.27 +0.2 254,006 - LRK54_RS01140 0.27 -0.7 254,006 - LRK54_RS01140 0.27 -0.1 254,006 - LRK54_RS01140 0.27 +0.7 254,006 - LRK54_RS01140 0.27 +0.2 254,006 - LRK54_RS01140 0.27 -0.4 254,113 + LRK54_RS01140 0.31 +0.4 254,113 + LRK54_RS01140 0.31 -0.3 254,113 + LRK54_RS01140 0.31 -0.3 254,113 + LRK54_RS01140 0.31 -1.0 254,114 - LRK54_RS01140 0.31 -0.2 254,114 - LRK54_RS01140 0.31 -0.7 254,114 - LRK54_RS01140 0.31 -0.0
Or see this region's nucleotide sequence