Strain Fitness in Pantoea sp. MT58 around IAI47_15695

Experiment: Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=UGA synthetic gw pH5.4; TreatmentDuration=24hrs; Outgrowth=LBkan50
3,307,759	+		IAI47_15685	0.82	-0.4
3,307,759	+		IAI47_15685	0.82	+0.8
3,307,759	+		IAI47_15685	0.82	+0.5
3,307,791	+		IAI47_15685	0.87	-0.7
3,307,791	+		IAI47_15685	0.87	+0.8
3,307,791	+		IAI47_15685	0.87	+2.6
3,307,791	+		IAI47_15685	0.87	+1.3
3,307,791	+		IAI47_15685	0.87	+0.1
3,307,791	+		IAI47_15685	0.87	-0.1
3,307,792	-		IAI47_15685	0.87	+1.4
3,307,792	-		IAI47_15685	0.87	+0.5
3,307,792	-		IAI47_15685	0.87	-0.4
3,307,792	-		IAI47_15685	0.87	+1.1
3,307,837	-				-2.8
3,307,837	-				+0.8
3,307,837	-				+1.7
3,307,837	-				+0.9
3,307,837	-				+1.7
3,307,848	+				+0.8
3,307,889	+				-0.4
3,307,890	-				-0.6
3,307,901	+				+0.4
3,307,901	+				+1.5
3,307,902	-				-3.2
3,307,902	-				+0.7
3,307,902	-				-3.0
3,307,902	-				+0.6
3,307,902	-				+1.8
3,307,906	+				-1.0
3,307,907	-				-3.1
3,307,907	-				-0.4
3,307,915	+				-0.0
3,307,986	+				-0.5
3,307,986	+				+1.4
3,307,987	-				+0.6
3,307,987	-				+2.2
3,307,988	+				+2.5
3,307,988	+				+1.6
3,307,989	-				+0.0
3,308,004	-				+2.1
3,308,015	+		IAI47_15690	0.11	+1.5
3,308,016	-		IAI47_15690	0.11	+2.3
3,308,016	-		IAI47_15690	0.11	+1.5
3,308,066	+		IAI47_15690	0.20	+1.4
3,308,067	-		IAI47_15690	0.20	+3.7
3,308,067	-		IAI47_15690	0.20	+1.2
3,308,067	-		IAI47_15690	0.20	+0.8
3,308,067	-		IAI47_15690	0.20	+3.0
3,308,067	-		IAI47_15690	0.20	+1.4
3,308,077	+		IAI47_15690	0.22	+1.8
3,308,078	-		IAI47_15690	0.23	+2.9
3,308,078	-		IAI47_15690	0.23	+2.7
3,308,078	-		IAI47_15690	0.23	+2.6
3,308,078	-		IAI47_15690	0.23	+1.7
3,308,116	-		IAI47_15690	0.30	+1.6
3,308,116	-		IAI47_15690	0.30	+1.8
3,308,162	-		IAI47_15690	0.38	+2.1
3,308,162	-		IAI47_15690	0.38	+1.8
3,308,193	+		IAI47_15690	0.44	-0.2
3,308,194	-		IAI47_15690	0.44	+2.5
3,308,194	-		IAI47_15690	0.44	+0.5
3,308,194	-		IAI47_15690	0.44	+2.7
3,308,285	+		IAI47_15690	0.61	+1.4
3,308,301	+		IAI47_15690	0.64	-0.8
3,308,377	+		IAI47_15690	0.78	+0.9
3,308,388	+		IAI47_15690	0.80	+2.9
3,308,389	-		IAI47_15690	0.80	+1.5
3,308,389	-		IAI47_15690	0.80	+2.4
3,308,474	-				+3.1
3,308,509	+				-1.9
3,308,593	+				+0.1
3,308,593	+				-1.0
3,308,598	+				+1.9
3,308,599	-				+1.2
3,308,629	+				+0.0
3,308,630	-				+0.2
3,308,630	-				+0.6
3,308,630	-				+0.9
3,308,634	+				+0.2
3,308,634	+				-2.0
3,308,634	+				-0.5
3,308,635	-				-0.8
3,308,635	-				-1.1
3,308,635	-				-0.7
3,308,635	-				+0.3
3,308,635	-				+0.1
3,308,651	+				+0.4
3,308,652	-				+0.3
3,308,674	+				+1.6
3,308,674	+				+1.1
3,308,696	+				+3.6
3,308,696	+				-1.2
3,308,701	+				+1.9
3,308,701	+				+0.8
3,308,701	+				+0.4
3,308,702	-				+0.3
3,308,702	-				+1.2
3,308,702	-				-1.3
3,308,737	+				-0.4
3,308,737	+				+1.5
3,308,737	+				+0.1
3,308,738	-				+1.5
3,308,738	-				+0.1
3,308,758	-				+0.2
3,308,800	+				+1.2
3,308,800	+				-0.3
3,308,800	+				+0.3
3,308,800	+				+0.3
3,308,800	+				+3.5
3,308,800	+				-1.4
3,308,800	+				+0.6
3,308,800	+				-0.6
3,308,800	+				-2.2
3,308,800	+				-2.0
3,308,800	+				-0.1
3,308,800	+				+0.2
3,308,801	-				-0.4
3,308,801	-				-0.5
3,308,801	-				+1.1
3,308,801	-				+0.8
3,308,801	-				+3.6
3,308,801	-				-0.9
3,308,801	-				+0.1
3,308,806	+				+0.9
3,308,806	+				-1.4
3,308,806	+				+2.7
3,308,806	+				-1.6
3,308,806	+				+0.7
3,308,806	+				+1.2
3,308,807	-				+1.9
3,308,807	-				+3.1
3,308,807	-				+1.4
3,308,905	+		IAI47_15695	0.14	-1.3
3,308,906	-		IAI47_15695	0.14	-0.1
3,308,967	+		IAI47_15695	0.19	-0.2
3,308,968	-		IAI47_15695	0.19	+0.5
3,308,968	-		IAI47_15695	0.19	+1.6
3,308,977	-		IAI47_15695	0.19	-0.4
3,308,977	-		IAI47_15695	0.19	+0.7
3,308,977	-		IAI47_15695	0.19	-0.5
3,309,010	+		IAI47_15695	0.22	+1.0
3,309,121	+		IAI47_15695	0.31	-1.2
3,309,121	+		IAI47_15695	0.31	-1.6
3,309,122	-		IAI47_15695	0.31	-0.8
3,309,122	-		IAI47_15695	0.31	+0.2
3,309,195	+		IAI47_15695	0.36	+0.7
3,309,196	-		IAI47_15695	0.36	+1.2
3,309,196	-		IAI47_15695	0.36	+1.5
3,309,304	-		IAI47_15695	0.45	+0.2
3,309,322	-		IAI47_15695	0.46	+1.0
3,309,428	+		IAI47_15695	0.55	-2.9
3,309,429	-		IAI47_15695	0.55	+0.0
3,309,429	-		IAI47_15695	0.55	+0.7
3,309,437	-		IAI47_15695	0.55	+0.0
3,309,451	+		IAI47_15695	0.56	+1.8
3,309,451	+		IAI47_15695	0.56	+0.9
3,309,451	+		IAI47_15695	0.56	+1.5
3,309,451	+		IAI47_15695	0.56	-2.4
3,309,451	+		IAI47_15695	0.56	+1.2
3,309,451	+		IAI47_15695	0.56	+1.0
3,309,451	+		IAI47_15695	0.56	-0.4
3,309,451	+		IAI47_15695	0.56	-1.4
3,309,451	+		IAI47_15695	0.56	-1.4
3,309,451	+		IAI47_15695	0.56	+0.6
3,309,452	-		IAI47_15695	0.56	-1.3
3,309,452	-		IAI47_15695	0.56	+0.0
3,309,452	-		IAI47_15695	0.56	+0.1
3,309,452	-		IAI47_15695	0.56	+0.9
3,309,452	-		IAI47_15695	0.56	+1.2
3,309,452	-		IAI47_15695	0.56	-1.2
3,309,452	-		IAI47_15695	0.56	+0.8
3,309,452	-		IAI47_15695	0.56	+1.4
3,309,452	-		IAI47_15695	0.56	+1.0
3,309,455	+		IAI47_15695	0.57	+0.0
3,309,455	+		IAI47_15695	0.57	+2.1
3,309,455	+		IAI47_15695	0.57	+0.2
3,309,455	+		IAI47_15695	0.57	-1.5
3,309,455	+		IAI47_15695	0.57	-1.0
3,309,455	+		IAI47_15695	0.57	-2.1
3,309,455	+		IAI47_15695	0.57	+0.3
3,309,456	-		IAI47_15695	0.57	+1.5
3,309,456	-		IAI47_15695	0.57	+0.3
3,309,474	+		IAI47_15695	0.58	-0.4
3,309,474	+		IAI47_15695	0.58	+1.1
3,309,474	+		IAI47_15695	0.58	-0.2
3,309,474	+		IAI47_15695	0.58	-0.4
3,309,498	+		IAI47_15695	0.60	+1.4
3,309,498	+		IAI47_15695	0.60	-0.2
3,309,498	+		IAI47_15695	0.60	-0.7
3,309,498	+		IAI47_15695	0.60	+2.3
3,309,576	+		IAI47_15695	0.66	-2.0
3,309,577	-		IAI47_15695	0.66	-0.3
3,309,577	-		IAI47_15695	0.66	-1.5
3,309,577	-		IAI47_15695	0.66	+0.1
3,309,686	+		IAI47_15695	0.75	+0.5
3,309,687	-		IAI47_15695	0.75	-0.5
3,309,691	+		IAI47_15695	0.75	+2.8
3,309,691	+		IAI47_15695	0.75	+0.7
3,309,691	+		IAI47_15695	0.75	-1.1
3,309,692	-		IAI47_15695	0.75	+0.8
3,309,692	-		IAI47_15695	0.75	+0.3
3,309,692	-		IAI47_15695	0.75	-0.1
3,309,724	+		IAI47_15695	0.78	-1.7
3,309,724	+		IAI47_15695	0.78	-0.8
3,309,724	+		IAI47_15695	0.78	-0.8
3,309,724	+		IAI47_15695	0.78	+0.2
3,309,725	-		IAI47_15695	0.78	+0.7
3,309,725	-		IAI47_15695	0.78	+0.8
3,309,725	-		IAI47_15695	0.78	+1.5
3,309,768	+		IAI47_15695	0.81	-1.2
3,309,769	-		IAI47_15695	0.81	-0.2
3,309,822	+		IAI47_15695	0.85	-3.0
3,309,822	+		IAI47_15695	0.85	-2.2
3,309,823	-		IAI47_15695	0.85	+1.1
3,309,823	-		IAI47_15695	0.85	+1.4
3,309,823	-		IAI47_15695	0.85	-0.5
3,309,823	-		IAI47_15695	0.85	-2.1
3,309,876	+		IAI47_15695	0.89	-1.6
3,309,876	+		IAI47_15695	0.89	+0.9
3,309,876	+		IAI47_15695	0.89	+1.1
3,309,877	-		IAI47_15695	0.89	+0.6
3,309,915	+				-0.4
3,309,915	+				+0.6
3,309,915	+				-2.1
3,309,915	+				-0.7
3,309,915	+				+0.9
3,309,916	-				+0.7
3,309,916	-				-2.0
3,309,921	+				+0.2
3,309,922	-				-0.3
3,309,922	-				-0.2
3,310,009	+				-2.6
3,310,009	+				-0.2
3,310,009	+				+0.2
3,310,010	-				+0.7
3,310,010	-				-1.3
3,310,023	+				+0.6
3,310,023	+				+1.1
3,310,044	+				-1.2
3,310,045	-				-1.1
3,310,045	-				+0.1
3,310,079	+				+1.9
3,310,079	+				+0.7
3,310,079	+				-1.3
3,310,079	+				+0.3
3,310,079	+				-1.2
3,310,079	+				-1.6
3,310,079	+				-0.2
3,310,079	+				+0.6
3,310,079	+				+0.2
3,310,079	+				-2.0
3,310,079	+				+2.1
3,310,079	+				+0.4
3,310,079	+				-0.4
3,310,079	+				+3.2
3,310,079	+				-2.5
3,310,079	+				-1.4
3,310,079	+				+2.4
3,310,079	+				-2.0
3,310,079	+				+0.5
3,310,080	-				+1.3
3,310,080	-				-0.8
3,310,080	-				-2.1
3,310,080	-				+0.7
3,310,080	-				+1.0
3,310,080	-				-1.3
3,310,080	-				+0.3
3,310,080	-				+2.4
3,310,080	-				-1.8
3,310,103	+				+0.9
3,310,103	+				-0.2
3,310,103	+				+0.8
3,310,104	-				+3.0
3,310,104	-				-1.6
3,310,104	-				+0.4
3,310,104	-				+0.8
3,310,104	-				-0.7
3,310,114	+				-0.6
3,310,152	+				+0.8
3,310,152	+				-0.1
3,310,152	+				+1.5
3,310,152	+				+0.4
3,310,152	+				+0.6
3,310,153	-				+0.2
3,310,153	-				-0.3
3,310,153	-				-3.2
3,310,153	-				+1.9
3,310,153	-				-0.3
3,310,153	-				-2.5
3,310,153	-				+1.4
3,310,207	-		IAI47_15700	0.12	+0.5
3,310,207	-		IAI47_15700	0.12	-2.6
3,310,281	-		IAI47_15700	0.17	+0.0
3,310,401	+		IAI47_15700	0.24	-2.2
3,310,401	+		IAI47_15700	0.24	-1.4
3,310,401	+		IAI47_15700	0.24	+2.3
3,310,401	+		IAI47_15700	0.24	+1.8
3,310,402	-		IAI47_15700	0.24	-2.0
3,310,402	-		IAI47_15700	0.24	+2.0
3,310,402	-		IAI47_15700	0.24	+0.1
3,310,420	-		IAI47_15700	0.25	-1.1
3,310,764	+		IAI47_15700	0.47	+1.5
3,310,765	-		IAI47_15700	0.47	-2.2
3,310,765	-		IAI47_15700	0.47	-2.0
3,310,765	-		IAI47_15700	0.47	-0.2
3,310,765	-		IAI47_15700	0.47	-0.1
3,310,765	-		IAI47_15700	0.47	+1.7
3,310,765	-		IAI47_15700	0.47	-2.0
3,310,765	-		IAI47_15700	0.47	-3.2
3,310,774	+		IAI47_15700	0.47	+0.2
3,310,819	+		IAI47_15700	0.50	-1.5
3,310,857	+		IAI47_15700	0.52	+1.5
3,310,857	+		IAI47_15700	0.52	-0.2
3,310,857	+		IAI47_15700	0.52	+0.7
3,310,857	+		IAI47_15700	0.52	-0.3
3,310,858	-		IAI47_15700	0.52	+0.8
3,310,858	-		IAI47_15700	0.52	+0.5
3,310,858	-		IAI47_15700	0.52	-1.5
3,310,858	-		IAI47_15700	0.52	-0.8
3,310,859	+		IAI47_15700	0.52	+1.4
3,310,859	+		IAI47_15700	0.52	-1.9
3,310,859	+		IAI47_15700	0.52	-1.8
3,310,859	+		IAI47_15700	0.52	+3.1
3,310,859	+		IAI47_15700	0.52	-0.1
3,310,859	+		IAI47_15700	0.52	-1.1
3,310,859	+		IAI47_15700	0.52	+0.2
3,310,859	+		IAI47_15700	0.52	-1.3
3,310,859	+		IAI47_15700	0.52	+0.9
3,310,859	+		IAI47_15700	0.52	+0.5
3,310,860	-		IAI47_15700	0.53	-0.2
3,310,860	-		IAI47_15700	0.53	-1.1
3,310,860	-		IAI47_15700	0.53	-0.3
3,310,860	-		IAI47_15700	0.53	-3.2
3,310,860	-		IAI47_15700	0.53	+0.6
3,310,860	-		IAI47_15700	0.53	-2.9
3,310,860	-		IAI47_15700	0.53	-0.0
3,310,860	-		IAI47_15700	0.53	-0.2
3,310,872	+		IAI47_15700	0.53	+0.4
3,310,872	+		IAI47_15700	0.53	-1.2
3,310,873	-		IAI47_15700	0.53	+0.7
3,310,873	-		IAI47_15700	0.53	-0.9
3,310,905	+		IAI47_15700	0.55	+2.5
3,310,962	-		IAI47_15700	0.59	-1.7