Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1393

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1392 and Ga0059261_1393 are separated by 30 nucleotidesGa0059261_1393 and Ga0059261_1394 are separated by 37 nucleotides Ga0059261_1392: Ga0059261_1392 - hypothetical protein, at 1,470,666 to 1,472,363 _1392 Ga0059261_1393: Ga0059261_1393 - argininosuccinate synthase (EC 6.3.4.5), at 1,472,394 to 1,473,611 _1393 Ga0059261_1394: Ga0059261_1394 - putative efflux protein, MATE family, at 1,473,649 to 1,474,986 _1394 Position (kb) 1472 1473 1474Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 1471.432 kb on + strand, within Ga0059261_1392at 1471.432 kb on + strand, within Ga0059261_1392at 1471.432 kb on + strand, within Ga0059261_1392at 1471.433 kb on - strand, within Ga0059261_1392at 1471.433 kb on - strand, within Ga0059261_1392at 1471.433 kb on - strand, within Ga0059261_1392at 1471.529 kb on + strand, within Ga0059261_1392at 1471.529 kb on + strand, within Ga0059261_1392at 1471.529 kb on + strand, within Ga0059261_1392at 1471.530 kb on - strand, within Ga0059261_1392at 1471.530 kb on - strand, within Ga0059261_1392at 1471.530 kb on - strand, within Ga0059261_1392at 1471.530 kb on - strand, within Ga0059261_1392at 1471.530 kb on - strand, within Ga0059261_1392at 1471.621 kb on + strand, within Ga0059261_1392at 1471.621 kb on + strand, within Ga0059261_1392at 1471.621 kb on + strand, within Ga0059261_1392at 1471.622 kb on - strand, within Ga0059261_1392at 1471.622 kb on - strand, within Ga0059261_1392at 1471.687 kb on + strand, within Ga0059261_1392at 1471.687 kb on + strand, within Ga0059261_1392at 1471.688 kb on - strand, within Ga0059261_1392at 1472.247 kb on + strandat 1472.247 kb on + strandat 1472.247 kb on + strandat 1472.248 kb on - strandat 1472.248 kb on - strandat 1472.281 kb on - strandat 1472.340 kb on + strandat 1472.470 kb on + strandat 1472.471 kb on - strandat 1472.471 kb on - strandat 1472.471 kb on - strandat 1472.512 kb on + strandat 1472.512 kb on + strandat 1472.512 kb on + strandat 1472.513 kb on - strandat 1472.513 kb on - strandat 1472.545 kb on + strand, within Ga0059261_1393at 1472.545 kb on + strand, within Ga0059261_1393at 1472.545 kb on + strand, within Ga0059261_1393at 1472.545 kb on + strand, within Ga0059261_1393at 1472.545 kb on + strand, within Ga0059261_1393at 1472.545 kb on + strand, within Ga0059261_1393at 1472.546 kb on - strand, within Ga0059261_1393at 1472.546 kb on - strand, within Ga0059261_1393at 1472.546 kb on - strand, within Ga0059261_1393at 1472.546 kb on - strand, within Ga0059261_1393at 1472.546 kb on - strand, within Ga0059261_1393at 1472.546 kb on - strand, within Ga0059261_1393at 1472.546 kb on - strand, within Ga0059261_1393at 1472.546 kb on - strand, within Ga0059261_1393at 1472.546 kb on - strand, within Ga0059261_1393at 1472.546 kb on - strand, within Ga0059261_1393at 1472.560 kb on + strand, within Ga0059261_1393at 1472.560 kb on + strandat 1472.560 kb on + strand, within Ga0059261_1393at 1472.560 kb on + strand, within Ga0059261_1393at 1472.560 kb on + strand, within Ga0059261_1393at 1472.560 kb on + strand, within Ga0059261_1393at 1472.560 kb on + strand, within Ga0059261_1393at 1472.561 kb on - strand, within Ga0059261_1393at 1472.561 kb on - strand, within Ga0059261_1393at 1472.561 kb on - strand, within Ga0059261_1393at 1472.561 kb on - strand, within Ga0059261_1393at 1472.656 kb on + strand, within Ga0059261_1393at 1472.657 kb on - strand, within Ga0059261_1393at 1472.671 kb on + strand, within Ga0059261_1393at 1472.752 kb on + strand, within Ga0059261_1393at 1472.752 kb on + strand, within Ga0059261_1393at 1472.752 kb on + strand, within Ga0059261_1393at 1472.752 kb on + strand, within Ga0059261_1393at 1472.752 kb on + strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.753 kb on - strand, within Ga0059261_1393at 1472.776 kb on + strand, within Ga0059261_1393at 1472.776 kb on + strand, within Ga0059261_1393at 1472.776 kb on + strand, within Ga0059261_1393at 1472.776 kb on + strand, within Ga0059261_1393at 1472.776 kb on + strandat 1472.777 kb on - strand, within Ga0059261_1393at 1472.777 kb on - strand, within Ga0059261_1393at 1472.777 kb on - strand, within Ga0059261_1393at 1472.777 kb on - strand, within Ga0059261_1393at 1472.777 kb on - strand, within Ga0059261_1393at 1472.777 kb on - strand, within Ga0059261_1393at 1472.777 kb on - strand, within Ga0059261_1393at 1472.777 kb on - strand, within Ga0059261_1393at 1472.941 kb on + strand, within Ga0059261_1393at 1472.941 kb on + strand, within Ga0059261_1393at 1472.942 kb on - strand, within Ga0059261_1393at 1472.942 kb on - strand, within Ga0059261_1393at 1472.942 kb on - strand, within Ga0059261_1393at 1472.992 kb on + strandat 1472.992 kb on + strand, within Ga0059261_1393at 1472.992 kb on + strand, within Ga0059261_1393at 1472.992 kb on + strand, within Ga0059261_1393at 1472.992 kb on + strand, within Ga0059261_1393at 1472.992 kb on + strand, within Ga0059261_1393at 1472.992 kb on + strand, within Ga0059261_1393at 1472.993 kb on - strand, within Ga0059261_1393at 1472.993 kb on - strand, within Ga0059261_1393at 1472.993 kb on - strand, within Ga0059261_1393at 1472.993 kb on - strand, within Ga0059261_1393at 1472.993 kb on - strand, within Ga0059261_1393at 1473.194 kb on + strand, within Ga0059261_1393at 1473.194 kb on + strand, within Ga0059261_1393at 1473.195 kb on - strand, within Ga0059261_1393at 1473.202 kb on + strand, within Ga0059261_1393at 1473.202 kb on + strand, within Ga0059261_1393at 1473.203 kb on - strandat 1473.340 kb on + strand, within Ga0059261_1393at 1473.341 kb on - strand, within Ga0059261_1393at 1473.341 kb on - strand, within Ga0059261_1393at 1473.341 kb on - strand, within Ga0059261_1393at 1473.341 kb on - strand, within Ga0059261_1393at 1473.341 kb on - strand, within Ga0059261_1393at 1473.352 kb on + strand, within Ga0059261_1393at 1473.353 kb on - strand, within Ga0059261_1393at 1473.353 kb on - strand, within Ga0059261_1393at 1473.425 kb on + strand, within Ga0059261_1393at 1473.425 kb on + strand, within Ga0059261_1393at 1473.425 kb on + strand, within Ga0059261_1393at 1473.425 kb on + strand, within Ga0059261_1393at 1473.425 kb on + strand, within Ga0059261_1393at 1473.426 kb on - strand, within Ga0059261_1393at 1473.426 kb on - strand, within Ga0059261_1393at 1473.426 kb on - strand, within Ga0059261_1393at 1473.426 kb on - strand, within Ga0059261_1393at 1473.426 kb on - strand, within Ga0059261_1393at 1473.426 kb on - strand, within Ga0059261_1393at 1473.526 kb on + strandat 1473.526 kb on + strandat 1473.526 kb on + strandat 1473.527 kb on - strandat 1473.527 kb on - strandat 1473.527 kb on - strandat 1473.578 kb on - strandat 1473.578 kb on - strandat 1473.650 kb on + strandat 1473.650 kb on + strandat 1473.650 kb on + strandat 1473.650 kb on + strandat 1473.699 kb on - strandat 1473.699 kb on - strandat 1473.722 kb on + strandat 1473.723 kb on - strandat 1473.723 kb on - strandat 1473.728 kb on + strandat 1473.728 kb on + strandat 1473.728 kb on + strandat 1473.729 kb on - strandat 1473.729 kb on - strandat 1473.729 kb on - strandat 1473.729 kb on - strandat 1473.729 kb on - strandat 1473.797 kb on + strandat 1473.797 kb on + strand, within Ga0059261_1394at 1473.797 kb on + strand, within Ga0059261_1394at 1473.797 kb on + strand, within Ga0059261_1394at 1473.798 kb on - strand, within Ga0059261_1394at 1473.798 kb on - strand, within Ga0059261_1394at 1473.798 kb on - strand, within Ga0059261_1394at 1473.798 kb on - strand, within Ga0059261_1394at 1473.798 kb on - strand, within Ga0059261_1394at 1473.927 kb on - strand, within Ga0059261_1394at 1473.927 kb on - strand, within Ga0059261_1394at 1473.927 kb on - strand, within Ga0059261_1394at 1473.927 kb on - strand, within Ga0059261_1394at 1474.126 kb on + strand, within Ga0059261_1394at 1474.126 kb on + strand, within Ga0059261_1394at 1474.520 kb on + strand, within Ga0059261_1394at 1474.520 kb on + strand, within Ga0059261_1394at 1474.521 kb on - strand, within Ga0059261_1394at 1474.521 kb on - strandat 1474.521 kb on - strand, within Ga0059261_1394at 1474.521 kb on - strand, within Ga0059261_1394at 1474.541 kb on + strand, within Ga0059261_1394at 1474.541 kb on + strand, within Ga0059261_1394at 1474.541 kb on + strand, within Ga0059261_1394at 1474.542 kb on - strand, within Ga0059261_1394at 1474.542 kb on - strand, within Ga0059261_1394at 1474.542 kb on - strand, within Ga0059261_1394

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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1,471,432 + Ga0059261_1392 0.45 +0.3
1,471,432 + Ga0059261_1392 0.45 +0.3
1,471,432 + Ga0059261_1392 0.45 -0.3
1,471,433 - Ga0059261_1392 0.45 +0.6
1,471,433 - Ga0059261_1392 0.45 -0.2
1,471,433 - Ga0059261_1392 0.45 -0.3
1,471,529 + Ga0059261_1392 0.51 -0.3
1,471,529 + Ga0059261_1392 0.51 +0.8
1,471,529 + Ga0059261_1392 0.51 +0.6
1,471,530 - Ga0059261_1392 0.51 -0.1
1,471,530 - Ga0059261_1392 0.51 +0.1
1,471,530 - Ga0059261_1392 0.51 -0.4
1,471,530 - Ga0059261_1392 0.51 +0.2
1,471,530 - Ga0059261_1392 0.51 -0.2
1,471,621 + Ga0059261_1392 0.56 +0.2
1,471,621 + Ga0059261_1392 0.56 -0.1
1,471,621 + Ga0059261_1392 0.56 +0.4
1,471,622 - Ga0059261_1392 0.56 +0.1
1,471,622 - Ga0059261_1392 0.56 +1.8
1,471,687 + Ga0059261_1392 0.60 +0.3
1,471,687 + Ga0059261_1392 0.60 +0.5
1,471,688 - Ga0059261_1392 0.60 -0.2
1,472,247 + +1.2
1,472,247 + +0.2
1,472,247 + +0.2
1,472,248 - -1.2
1,472,248 - -0.1
1,472,281 - -1.2
1,472,340 + +1.9
1,472,470 + -4.1
1,472,471 - -3.7
1,472,471 - -4.0
1,472,471 - -2.3
1,472,512 + -5.8
1,472,512 + -3.4
1,472,512 + -0.4
1,472,513 - -5.0
1,472,513 - -4.1
1,472,545 + Ga0059261_1393 0.12 -3.3
1,472,545 + Ga0059261_1393 0.12 -3.9
1,472,545 + Ga0059261_1393 0.12 -2.9
1,472,545 + Ga0059261_1393 0.12 -5.1
1,472,545 + Ga0059261_1393 0.12 -2.9
1,472,545 + Ga0059261_1393 0.12 -4.4
1,472,546 - Ga0059261_1393 0.12 -4.7
1,472,546 - Ga0059261_1393 0.12 -6.1
1,472,546 - Ga0059261_1393 0.12 -0.4
1,472,546 - Ga0059261_1393 0.12 -2.9
1,472,546 - Ga0059261_1393 0.12 -4.1
1,472,546 - Ga0059261_1393 0.12 -2.1
1,472,546 - Ga0059261_1393 0.12 -4.2
1,472,546 - Ga0059261_1393 0.12 -4.6
1,472,546 - Ga0059261_1393 0.12 -2.9
1,472,546 - Ga0059261_1393 0.12 -3.5
1,472,560 + Ga0059261_1393 0.14 -5.1
1,472,560 + -1.8
1,472,560 + Ga0059261_1393 0.14 -3.8
1,472,560 + Ga0059261_1393 0.14 -3.4
1,472,560 + Ga0059261_1393 0.14 -2.7
1,472,560 + Ga0059261_1393 0.14 -3.3
1,472,560 + Ga0059261_1393 0.14 -4.3
1,472,561 - Ga0059261_1393 0.14 -3.4
1,472,561 - Ga0059261_1393 0.14 -2.5
1,472,561 - Ga0059261_1393 0.14 -1.6
1,472,561 - Ga0059261_1393 0.14 -2.0
1,472,656 + Ga0059261_1393 0.22 -3.7
1,472,657 - Ga0059261_1393 0.22 -2.3
1,472,671 + Ga0059261_1393 0.23 -1.2
1,472,752 + Ga0059261_1393 0.29 -3.5
1,472,752 + Ga0059261_1393 0.29 -3.5
1,472,752 + Ga0059261_1393 0.29 -5.0
1,472,752 + Ga0059261_1393 0.29 -3.8
1,472,752 + Ga0059261_1393 0.29 -4.2
1,472,753 - Ga0059261_1393 0.29 -1.6
1,472,753 - Ga0059261_1393 0.29 -1.4
1,472,753 - Ga0059261_1393 0.29 -2.5
1,472,753 - Ga0059261_1393 0.29 -2.5
1,472,753 - Ga0059261_1393 0.29 -4.9
1,472,753 - Ga0059261_1393 0.29 -3.9
1,472,753 - Ga0059261_1393 0.29 -4.0
1,472,753 - Ga0059261_1393 0.29 -3.2
1,472,753 - Ga0059261_1393 0.29 -3.4
1,472,753 - Ga0059261_1393 0.29 -4.2
1,472,753 - Ga0059261_1393 0.29 -2.7
1,472,753 - Ga0059261_1393 0.29 -0.8
1,472,753 - Ga0059261_1393 0.29 -2.3
1,472,753 - Ga0059261_1393 0.29 -2.4
1,472,776 + Ga0059261_1393 0.31 -3.3
1,472,776 + Ga0059261_1393 0.31 -4.5
1,472,776 + Ga0059261_1393 0.31 -2.4
1,472,776 + Ga0059261_1393 0.31 -3.4
1,472,776 + -0.4
1,472,777 - Ga0059261_1393 0.31 -5.5
1,472,777 - Ga0059261_1393 0.31 -5.9
1,472,777 - Ga0059261_1393 0.31 -4.4
1,472,777 - Ga0059261_1393 0.31 -4.0
1,472,777 - Ga0059261_1393 0.31 -2.0
1,472,777 - Ga0059261_1393 0.31 -0.9
1,472,777 - Ga0059261_1393 0.31 -1.8
1,472,777 - Ga0059261_1393 0.31 -4.5
1,472,941 + Ga0059261_1393 0.45 -5.0
1,472,941 + Ga0059261_1393 0.45 -2.6
1,472,942 - Ga0059261_1393 0.45 -2.8
1,472,942 - Ga0059261_1393 0.45 -1.8
1,472,942 - Ga0059261_1393 0.45 -3.3
1,472,992 + -0.8
1,472,992 + Ga0059261_1393 0.49 -0.4
1,472,992 + Ga0059261_1393 0.49 -3.0
1,472,992 + Ga0059261_1393 0.49 -3.9
1,472,992 + Ga0059261_1393 0.49 -4.9
1,472,992 + Ga0059261_1393 0.49 -4.8
1,472,992 + Ga0059261_1393 0.49 -4.4
1,472,993 - Ga0059261_1393 0.49 -4.5
1,472,993 - Ga0059261_1393 0.49 -3.6
1,472,993 - Ga0059261_1393 0.49 -3.5
1,472,993 - Ga0059261_1393 0.49 -4.5
1,472,993 - Ga0059261_1393 0.49 -2.6
1,473,194 + Ga0059261_1393 0.66 -4.3
1,473,194 + Ga0059261_1393 0.66 -3.1
1,473,195 - Ga0059261_1393 0.66 -2.8
1,473,202 + Ga0059261_1393 0.66 -2.4
1,473,202 + Ga0059261_1393 0.66 -3.6
1,473,203 - -0.8
1,473,340 + Ga0059261_1393 0.78 -2.6
1,473,341 - Ga0059261_1393 0.78 -2.8
1,473,341 - Ga0059261_1393 0.78 -2.2
1,473,341 - Ga0059261_1393 0.78 -5.5
1,473,341 - Ga0059261_1393 0.78 -3.3
1,473,341 - Ga0059261_1393 0.78 -2.5
1,473,352 + Ga0059261_1393 0.79 -4.5
1,473,353 - Ga0059261_1393 0.79 -2.6
1,473,353 - Ga0059261_1393 0.79 -1.9
1,473,425 + Ga0059261_1393 0.85 -3.0
1,473,425 + Ga0059261_1393 0.85 -2.8
1,473,425 + Ga0059261_1393 0.85 -0.8
1,473,425 + Ga0059261_1393 0.85 -3.3
1,473,425 + Ga0059261_1393 0.85 -0.8
1,473,426 - Ga0059261_1393 0.85 -2.2
1,473,426 - Ga0059261_1393 0.85 -4.6
1,473,426 - Ga0059261_1393 0.85 -5.1
1,473,426 - Ga0059261_1393 0.85 -3.3
1,473,426 - Ga0059261_1393 0.85 -2.3
1,473,426 - Ga0059261_1393 0.85 -3.1
1,473,526 + -1.4
1,473,526 + -1.6
1,473,526 + -1.4
1,473,527 - -5.1
1,473,527 - +0.2
1,473,527 - -2.7
1,473,578 - -3.2
1,473,578 - -5.2
1,473,650 + -1.2
1,473,650 + -2.8
1,473,650 + -2.9
1,473,650 + -2.2
1,473,699 - -0.1
1,473,699 - -0.1
1,473,722 + +0.0
1,473,723 - +0.5
1,473,723 - -0.5
1,473,728 + -0.1
1,473,728 + +1.2
1,473,728 + -1.2
1,473,729 - -0.2
1,473,729 - +0.4
1,473,729 - +0.2
1,473,729 - -0.4
1,473,729 - -0.2
1,473,797 + +1.2
1,473,797 + Ga0059261_1394 0.11 -0.5
1,473,797 + Ga0059261_1394 0.11 +0.1
1,473,797 + Ga0059261_1394 0.11 +0.0
1,473,798 - Ga0059261_1394 0.11 +0.1
1,473,798 - Ga0059261_1394 0.11 +0.9
1,473,798 - Ga0059261_1394 0.11 -0.4
1,473,798 - Ga0059261_1394 0.11 -2.5
1,473,798 - Ga0059261_1394 0.11 -0.5
1,473,927 - Ga0059261_1394 0.21 -0.1
1,473,927 - Ga0059261_1394 0.21 +0.4
1,473,927 - Ga0059261_1394 0.21 +0.6
1,473,927 - Ga0059261_1394 0.21 +0.2
1,474,126 + Ga0059261_1394 0.36 -1.3
1,474,126 + Ga0059261_1394 0.36 -0.1
1,474,520 + Ga0059261_1394 0.65 -0.3
1,474,520 + Ga0059261_1394 0.65 -1.1
1,474,521 - Ga0059261_1394 0.65 -0.3
1,474,521 - +0.2
1,474,521 - Ga0059261_1394 0.65 -1.4
1,474,521 - Ga0059261_1394 0.65 -1.0
1,474,541 + Ga0059261_1394 0.67 +0.7
1,474,541 + Ga0059261_1394 0.67 -0.4
1,474,541 + Ga0059261_1394 0.67 +0.5
1,474,542 - Ga0059261_1394 0.67 -1.6
1,474,542 - Ga0059261_1394 0.67 -0.2
1,474,542 - Ga0059261_1394 0.67 -0.1

Or see this region's nucleotide sequence