Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0660

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0658 and Ga0059261_0659 are separated by 4 nucleotidesGa0059261_0659 and Ga0059261_0660 are separated by 28 nucleotidesGa0059261_0660 and Ga0059261_0661 are separated by 16 nucleotidesGa0059261_0661 and Ga0059261_0662 are separated by 89 nucleotidesGa0059261_0662 and Ga0059261_0663 overlap by 4 nucleotides Ga0059261_0658: Ga0059261_0658 - Beta-lactamase class C and other penicillin binding proteins, at 698,579 to 699,859 _0658 Ga0059261_0659: Ga0059261_0659 - transcriptional regulator, HxlR family, at 699,864 to 700,310 _0659 Ga0059261_0660: Ga0059261_0660 - Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein), at 700,339 to 701,100 _0660 Ga0059261_0661: Ga0059261_0661 - hypothetical protein, at 701,117 to 701,263 _0661 Ga0059261_0662: Ga0059261_0662 - Truncated hemoglobins, at 701,353 to 701,769 _0662 Ga0059261_0663: Ga0059261_0663 - Prokaryotic homologs of the JAB domain, at 701,766 to 702,068 _0663 Position (kb) 700 701 702Strain fitness (log2 ratio) -2 -1 0 1at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.360 kb on - strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.476 kb on + strand, within Ga0059261_0658at 699.477 kb on - strand, within Ga0059261_0658at 699.477 kb on - strand, within Ga0059261_0658at 699.477 kb on - strand, within Ga0059261_0658at 699.477 kb on - strand, within Ga0059261_0658at 699.529 kb on + strand, within Ga0059261_0658at 699.529 kb on + strand, within Ga0059261_0658at 699.529 kb on + strand, within Ga0059261_0658at 699.585 kb on + strand, within Ga0059261_0658at 699.824 kb on + strandat 699.824 kb on + strandat 699.825 kb on - strandat 699.825 kb on - strandat 699.825 kb on - strandat 699.825 kb on - strandat 699.836 kb on + strandat 699.836 kb on + strandat 699.836 kb on + strandat 699.836 kb on + strandat 699.836 kb on + strandat 700.163 kb on + strand, within Ga0059261_0659at 700.164 kb on - strand, within Ga0059261_0659at 700.205 kb on + strand, within Ga0059261_0659at 700.244 kb on + strand, within Ga0059261_0659at 700.245 kb on - strand, within Ga0059261_0659at 700.263 kb on - strand, within Ga0059261_0659at 700.264 kb on + strand, within Ga0059261_0659at 700.615 kb on + strand, within Ga0059261_0660at 700.789 kb on + strand, within Ga0059261_0660at 700.789 kb on + strand, within Ga0059261_0660at 700.789 kb on + strand, within Ga0059261_0660at 700.790 kb on - strand, within Ga0059261_0660at 700.790 kb on - strand, within Ga0059261_0660at 700.819 kb on + strand, within Ga0059261_0660at 700.819 kb on + strand, within Ga0059261_0660at 700.819 kb on + strand, within Ga0059261_0660at 700.819 kb on + strand, within Ga0059261_0660at 700.820 kb on - strandat 700.820 kb on - strand, within Ga0059261_0660at 700.820 kb on - strand, within Ga0059261_0660at 700.820 kb on - strand, within Ga0059261_0660at 700.886 kb on + strand, within Ga0059261_0660at 700.886 kb on + strand, within Ga0059261_0660at 700.887 kb on - strand, within Ga0059261_0660at 701.279 kb on - strandat 701.279 kb on - strandat 701.279 kb on - strandat 701.291 kb on - strandat 701.350 kb on + strandat 701.350 kb on + strandat 701.350 kb on + strandat 701.350 kb on + strandat 701.350 kb on + strandat 701.350 kb on + strandat 701.350 kb on + strandat 701.350 kb on + strandat 701.350 kb on + strandat 701.350 kb on + strandat 701.351 kb on - strandat 701.351 kb on - strandat 701.351 kb on - strandat 701.351 kb on - strandat 701.351 kb on - strandat 701.351 kb on - strandat 701.351 kb on - strandat 701.351 kb on - strandat 701.351 kb on - strandat 701.361 kb on + strandat 701.361 kb on + strandat 701.361 kb on + strandat 701.362 kb on - strandat 701.362 kb on - strandat 701.362 kb on - strandat 701.434 kb on + strand, within Ga0059261_0662at 701.435 kb on - strand, within Ga0059261_0662at 701.435 kb on - strand, within Ga0059261_0662at 701.435 kb on - strand, within Ga0059261_0662at 701.557 kb on + strand, within Ga0059261_0662at 701.557 kb on + strand, within Ga0059261_0662at 701.557 kb on + strand, within Ga0059261_0662at 701.767 kb on + strandat 701.768 kb on - strandat 701.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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699,360 - Ga0059261_0658 0.61 +0.6
699,360 - Ga0059261_0658 0.61 -0.4
699,360 - Ga0059261_0658 0.61 +0.8
699,360 - Ga0059261_0658 0.61 -0.1
699,360 - Ga0059261_0658 0.61 +0.4
699,360 - Ga0059261_0658 0.61 -0.9
699,360 - Ga0059261_0658 0.61 -2.3
699,360 - Ga0059261_0658 0.61 +0.3
699,360 - Ga0059261_0658 0.61 +0.3
699,360 - Ga0059261_0658 0.61 +0.6
699,360 - Ga0059261_0658 0.61 -0.3
699,360 - Ga0059261_0658 0.61 -0.5
699,476 + Ga0059261_0658 0.70 -0.5
699,476 + Ga0059261_0658 0.70 +0.3
699,476 + Ga0059261_0658 0.70 -0.3
699,476 + Ga0059261_0658 0.70 +0.5
699,476 + Ga0059261_0658 0.70 +0.0
699,476 + Ga0059261_0658 0.70 -0.4
699,476 + Ga0059261_0658 0.70 -0.1
699,477 - Ga0059261_0658 0.70 -0.4
699,477 - Ga0059261_0658 0.70 +0.7
699,477 - Ga0059261_0658 0.70 -1.0
699,477 - Ga0059261_0658 0.70 +1.0
699,529 + Ga0059261_0658 0.74 -0.2
699,529 + Ga0059261_0658 0.74 +0.2
699,529 + Ga0059261_0658 0.74 +0.6
699,585 + Ga0059261_0658 0.79 -0.5
699,824 + -0.4
699,824 + +0.7
699,825 - -0.1
699,825 - +1.5
699,825 - +1.0
699,825 - +0.7
699,836 + -0.3
699,836 + +0.0
699,836 + +0.8
699,836 + -0.1
699,836 + -0.5
700,163 + Ga0059261_0659 0.67 +0.6
700,164 - Ga0059261_0659 0.67 +0.4
700,205 + Ga0059261_0659 0.76 +1.0
700,244 + Ga0059261_0659 0.85 -0.5
700,245 - Ga0059261_0659 0.85 -0.1
700,263 - Ga0059261_0659 0.89 +0.7
700,264 + Ga0059261_0659 0.89 -0.1
700,615 + Ga0059261_0660 0.36 +0.1
700,789 + Ga0059261_0660 0.59 -0.5
700,789 + Ga0059261_0660 0.59 +0.3
700,789 + Ga0059261_0660 0.59 -0.8
700,790 - Ga0059261_0660 0.59 -0.1
700,790 - Ga0059261_0660 0.59 +0.4
700,819 + Ga0059261_0660 0.63 +0.2
700,819 + Ga0059261_0660 0.63 +0.1
700,819 + Ga0059261_0660 0.63 +0.5
700,819 + Ga0059261_0660 0.63 -0.6
700,820 - +0.3
700,820 - Ga0059261_0660 0.63 +0.5
700,820 - Ga0059261_0660 0.63 -0.1
700,820 - Ga0059261_0660 0.63 +0.5
700,886 + Ga0059261_0660 0.72 +0.1
700,886 + Ga0059261_0660 0.72 +0.4
700,887 - Ga0059261_0660 0.72 +0.6
701,279 - -0.5
701,279 - +0.2
701,279 - -0.0
701,291 - -0.1
701,350 + -0.1
701,350 + -0.3
701,350 + +0.7
701,350 + +0.8
701,350 + -0.0
701,350 + +0.0
701,350 + -0.2
701,350 + +0.5
701,350 + +0.2
701,350 + +0.5
701,351 - -0.0
701,351 - -0.5
701,351 - +0.2
701,351 - +0.7
701,351 - +0.0
701,351 - -0.5
701,351 - +0.0
701,351 - +0.4
701,351 - -0.4
701,361 + +0.5
701,361 + +0.2
701,361 + -0.2
701,362 - -0.7
701,362 - -1.1
701,362 - -0.4
701,434 + Ga0059261_0662 0.19 -0.0
701,435 - Ga0059261_0662 0.20 -0.7
701,435 - Ga0059261_0662 0.20 -0.2
701,435 - Ga0059261_0662 0.20 -0.7
701,557 + Ga0059261_0662 0.49 -0.7
701,557 + Ga0059261_0662 0.49 +0.3
701,557 + Ga0059261_0662 0.49 -1.0
701,767 + +0.0
701,768 - -0.3
701,768 - +0.5

Or see this region's nucleotide sequence