Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0033

Experiment: L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0030 and Ga0059261_0031 are separated by 141 nucleotidesGa0059261_0031 and Ga0059261_0032 are separated by 13 nucleotidesGa0059261_0032 and Ga0059261_0033 overlap by 4 nucleotidesGa0059261_0033 and Ga0059261_0034 are separated by 73 nucleotidesGa0059261_0034 and Ga0059261_0035 overlap by 58 nucleotides Ga0059261_0030: Ga0059261_0030 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 25,737 to 26,549 _0030 Ga0059261_0031: Ga0059261_0031 - Lactoylglutathione lyase and related lyases, at 26,691 to 27,080 _0031 Ga0059261_0032: Ga0059261_0032 - Protein of unknown function, DUF488, at 27,094 to 27,525 _0032 Ga0059261_0033: Ga0059261_0033 - transcriptional regulator, AsnC family, at 27,522 to 27,974 _0033 Ga0059261_0034: Ga0059261_0034 - Putative threonine efflux protein, at 28,048 to 28,698 _0034 Ga0059261_0035: Ga0059261_0035 - Uncharacterized protein conserved in bacteria, at 28,641 to 28,985 _0035 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 26.522 kb on - strandat 26.522 kb on - strandat 26.522 kb on - strandat 26.561 kb on + strandat 26.589 kb on + strandat 26.589 kb on + strandat 26.589 kb on + strandat 26.590 kb on - strandat 26.590 kb on - strandat 26.590 kb on - strandat 26.590 kb on - strandat 26.590 kb on - strandat 26.591 kb on + strandat 26.591 kb on + strandat 26.592 kb on - strandat 26.592 kb on - strandat 26.592 kb on - strandat 26.592 kb on - strandat 26.592 kb on - strandat 26.610 kb on + strandat 26.611 kb on - strandat 26.659 kb on + strandat 26.745 kb on + strand, within Ga0059261_0031at 26.745 kb on + strand, within Ga0059261_0031at 26.745 kb on + strand, within Ga0059261_0031at 26.745 kb on + strand, within Ga0059261_0031at 26.745 kb on + strand, within Ga0059261_0031at 26.745 kb on + strand, within Ga0059261_0031at 26.746 kb on - strand, within Ga0059261_0031at 26.792 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strandat 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.817 kb on + strand, within Ga0059261_0031at 26.818 kb on - strand, within Ga0059261_0031at 26.818 kb on - strand, within Ga0059261_0031at 26.818 kb on - strand, within Ga0059261_0031at 26.818 kb on - strand, within Ga0059261_0031at 26.891 kb on + strand, within Ga0059261_0031at 26.891 kb on + strand, within Ga0059261_0031at 26.891 kb on + strand, within Ga0059261_0031at 26.891 kb on + strand, within Ga0059261_0031at 26.891 kb on + strand, within Ga0059261_0031at 26.891 kb on + strand, within Ga0059261_0031at 26.891 kb on + strand, within Ga0059261_0031at 26.892 kb on - strand, within Ga0059261_0031at 26.892 kb on - strand, within Ga0059261_0031at 26.892 kb on - strand, within Ga0059261_0031at 26.892 kb on - strand, within Ga0059261_0031at 26.892 kb on - strand, within Ga0059261_0031at 26.892 kb on - strand, within Ga0059261_0031at 26.892 kb on - strand, within Ga0059261_0031at 26.892 kb on - strand, within Ga0059261_0031at 26.898 kb on - strand, within Ga0059261_0031at 27.000 kb on + strand, within Ga0059261_0031at 27.001 kb on - strand, within Ga0059261_0031at 27.012 kb on + strand, within Ga0059261_0031at 27.012 kb on + strand, within Ga0059261_0031at 27.012 kb on + strand, within Ga0059261_0031at 27.012 kb on + strand, within Ga0059261_0031at 27.013 kb on - strand, within Ga0059261_0031at 27.013 kb on - strand, within Ga0059261_0031at 27.013 kb on - strand, within Ga0059261_0031at 27.015 kb on + strand, within Ga0059261_0031at 27.015 kb on + strand, within Ga0059261_0031at 27.015 kb on + strand, within Ga0059261_0031at 27.015 kb on + strand, within Ga0059261_0031at 27.015 kb on + strand, within Ga0059261_0031at 27.015 kb on + strand, within Ga0059261_0031at 27.015 kb on + strand, within Ga0059261_0031at 27.015 kb on + strand, within Ga0059261_0031at 27.016 kb on - strand, within Ga0059261_0031at 27.016 kb on - strand, within Ga0059261_0031at 27.016 kb on - strand, within Ga0059261_0031at 27.016 kb on - strand, within Ga0059261_0031at 27.031 kb on - strand, within Ga0059261_0031at 27.031 kb on - strand, within Ga0059261_0031at 27.068 kb on + strandat 27.115 kb on + strandat 27.115 kb on + strandat 27.115 kb on + strandat 27.115 kb on + strandat 27.115 kb on + strandat 27.116 kb on - strandat 27.116 kb on - strandat 27.116 kb on - strandat 27.265 kb on + strand, within Ga0059261_0032at 27.266 kb on - strand, within Ga0059261_0032at 27.289 kb on - strand, within Ga0059261_0032at 27.349 kb on + strand, within Ga0059261_0032at 27.349 kb on + strand, within Ga0059261_0032at 27.350 kb on - strand, within Ga0059261_0032at 27.350 kb on - strand, within Ga0059261_0032at 27.523 kb on + strandat 27.524 kb on - strandat 27.559 kb on + strandat 27.559 kb on + strandat 27.559 kb on + strandat 27.559 kb on + strandat 27.560 kb on - strandat 27.619 kb on + strand, within Ga0059261_0033at 27.619 kb on + strand, within Ga0059261_0033at 27.619 kb on + strand, within Ga0059261_0033at 27.620 kb on - strandat 27.620 kb on - strand, within Ga0059261_0033at 27.620 kb on - strand, within Ga0059261_0033at 27.655 kb on + strand, within Ga0059261_0033at 27.655 kb on + strand, within Ga0059261_0033at 27.655 kb on + strandat 27.655 kb on + strand, within Ga0059261_0033at 27.767 kb on + strand, within Ga0059261_0033at 27.767 kb on + strandat 27.767 kb on + strand, within Ga0059261_0033at 27.768 kb on - strand, within Ga0059261_0033at 27.769 kb on + strand, within Ga0059261_0033at 27.769 kb on + strand, within Ga0059261_0033at 27.769 kb on + strand, within Ga0059261_0033at 27.769 kb on + strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.770 kb on - strand, within Ga0059261_0033at 27.943 kb on - strandat 27.943 kb on - strandat 27.948 kb on - strandat 28.205 kb on + strand, within Ga0059261_0034at 28.206 kb on - strand, within Ga0059261_0034at 28.206 kb on - strand, within Ga0059261_0034at 28.206 kb on - strand, within Ga0059261_0034at 28.206 kb on - strand, within Ga0059261_0034at 28.294 kb on + strand, within Ga0059261_0034at 28.294 kb on + strand, within Ga0059261_0034at 28.295 kb on - strand, within Ga0059261_0034at 28.303 kb on + strand, within Ga0059261_0034at 28.303 kb on + strand, within Ga0059261_0034at 28.304 kb on - strand, within Ga0059261_0034at 28.444 kb on + strand, within Ga0059261_0034at 28.444 kb on + strand, within Ga0059261_0034at 28.444 kb on + strand, within Ga0059261_0034at 28.444 kb on + strand, within Ga0059261_0034at 28.445 kb on - strand, within Ga0059261_0034at 28.445 kb on - strand, within Ga0059261_0034at 28.445 kb on - strand, within Ga0059261_0034at 28.445 kb on - strand, within Ga0059261_0034at 28.445 kb on - strand, within Ga0059261_0034at 28.627 kb on + strand, within Ga0059261_0034at 28.696 kb on + strandat 28.697 kb on - strandat 28.697 kb on - strandat 28.773 kb on + strandat 28.774 kb on - strand, within Ga0059261_0035at 28.885 kb on + strandat 28.885 kb on + strand, within Ga0059261_0035at 28.886 kb on - strand, within Ga0059261_0035at 28.886 kb on - strand, within Ga0059261_0035at 28.886 kb on - strand, within Ga0059261_0035at 28.966 kb on + strandat 28.966 kb on + strandat 28.966 kb on + strandat 28.966 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
remove
26,522 - +0.1
26,522 - -0.9
26,522 - -0.5
26,561 + +0.7
26,589 + -0.0
26,589 + -1.3
26,589 + +0.2
26,590 - +0.3
26,590 - +1.2
26,590 - -1.2
26,590 - -0.1
26,590 - -0.4
26,591 + +0.1
26,591 + -0.2
26,592 - -0.5
26,592 - +0.1
26,592 - -0.3
26,592 - -0.3
26,592 - +0.8
26,610 + -0.5
26,611 - -0.7
26,659 + -0.2
26,745 + Ga0059261_0031 0.14 +0.3
26,745 + Ga0059261_0031 0.14 +0.1
26,745 + Ga0059261_0031 0.14 -0.5
26,745 + Ga0059261_0031 0.14 +0.2
26,745 + Ga0059261_0031 0.14 +0.3
26,745 + Ga0059261_0031 0.14 +1.1
26,746 - Ga0059261_0031 0.14 +0.4
26,792 + Ga0059261_0031 0.26 +0.5
26,817 + Ga0059261_0031 0.32 +0.1
26,817 + Ga0059261_0031 0.32 +0.3
26,817 + Ga0059261_0031 0.32 -0.1
26,817 + Ga0059261_0031 0.32 -0.5
26,817 + Ga0059261_0031 0.32 +0.6
26,817 + Ga0059261_0031 0.32 -1.0
26,817 + -0.2
26,817 + Ga0059261_0031 0.32 -0.7
26,817 + Ga0059261_0031 0.32 -0.1
26,817 + Ga0059261_0031 0.32 +0.2
26,817 + Ga0059261_0031 0.32 -0.1
26,817 + Ga0059261_0031 0.32 -0.0
26,817 + Ga0059261_0031 0.32 +1.3
26,818 - Ga0059261_0031 0.33 +0.7
26,818 - Ga0059261_0031 0.33 +0.1
26,818 - Ga0059261_0031 0.33 +0.1
26,818 - Ga0059261_0031 0.33 +0.4
26,891 + Ga0059261_0031 0.51 -0.1
26,891 + Ga0059261_0031 0.51 +0.1
26,891 + Ga0059261_0031 0.51 +0.0
26,891 + Ga0059261_0031 0.51 -0.5
26,891 + Ga0059261_0031 0.51 +1.3
26,891 + Ga0059261_0031 0.51 -0.3
26,891 + Ga0059261_0031 0.51 +0.4
26,892 - Ga0059261_0031 0.52 -0.5
26,892 - Ga0059261_0031 0.52 -0.1
26,892 - Ga0059261_0031 0.52 +0.2
26,892 - Ga0059261_0031 0.52 +0.2
26,892 - Ga0059261_0031 0.52 +0.3
26,892 - Ga0059261_0031 0.52 -0.3
26,892 - Ga0059261_0031 0.52 +0.2
26,892 - Ga0059261_0031 0.52 -0.9
26,898 - Ga0059261_0031 0.53 -1.2
27,000 + Ga0059261_0031 0.79 +0.5
27,001 - Ga0059261_0031 0.79 +0.5
27,012 + Ga0059261_0031 0.82 +0.3
27,012 + Ga0059261_0031 0.82 +0.9
27,012 + Ga0059261_0031 0.82 +0.6
27,012 + Ga0059261_0031 0.82 +1.1
27,013 - Ga0059261_0031 0.83 +0.8
27,013 - Ga0059261_0031 0.83 -1.2
27,013 - Ga0059261_0031 0.83 -0.1
27,015 + Ga0059261_0031 0.83 +0.0
27,015 + Ga0059261_0031 0.83 -0.3
27,015 + Ga0059261_0031 0.83 +0.2
27,015 + Ga0059261_0031 0.83 -0.7
27,015 + Ga0059261_0031 0.83 -0.0
27,015 + Ga0059261_0031 0.83 -0.2
27,015 + Ga0059261_0031 0.83 +0.9
27,015 + Ga0059261_0031 0.83 -0.2
27,016 - Ga0059261_0031 0.83 +0.0
27,016 - Ga0059261_0031 0.83 -0.8
27,016 - Ga0059261_0031 0.83 -1.7
27,016 - Ga0059261_0031 0.83 -0.2
27,031 - Ga0059261_0031 0.87 +0.3
27,031 - Ga0059261_0031 0.87 -0.1
27,068 + -0.2
27,115 + -0.0
27,115 + +0.7
27,115 + -0.7
27,115 + -0.6
27,115 + +1.2
27,116 - -0.9
27,116 - +0.2
27,116 - +0.5
27,265 + Ga0059261_0032 0.40 -0.1
27,266 - Ga0059261_0032 0.40 +0.5
27,289 - Ga0059261_0032 0.45 -0.3
27,349 + Ga0059261_0032 0.59 +0.6
27,349 + Ga0059261_0032 0.59 +1.1
27,350 - Ga0059261_0032 0.59 -0.6
27,350 - Ga0059261_0032 0.59 +0.1
27,523 + -0.4
27,524 - -0.6
27,559 + -1.0
27,559 + +0.2
27,559 + +2.4
27,559 + +0.3
27,560 - -0.5
27,619 + Ga0059261_0033 0.21 +0.1
27,619 + Ga0059261_0033 0.21 +0.0
27,619 + Ga0059261_0033 0.21 -0.6
27,620 - +1.1
27,620 - Ga0059261_0033 0.22 +1.2
27,620 - Ga0059261_0033 0.22 -0.1
27,655 + Ga0059261_0033 0.29 +0.3
27,655 + Ga0059261_0033 0.29 +0.0
27,655 + +2.4
27,655 + Ga0059261_0033 0.29 +0.9
27,767 + Ga0059261_0033 0.54 -0.1
27,767 + +1.1
27,767 + Ga0059261_0033 0.54 +0.1
27,768 - Ga0059261_0033 0.54 +0.5
27,769 + Ga0059261_0033 0.55 +0.7
27,769 + Ga0059261_0033 0.55 +0.1
27,769 + Ga0059261_0033 0.55 +0.5
27,769 + Ga0059261_0033 0.55 +1.5
27,770 - Ga0059261_0033 0.55 -1.1
27,770 - Ga0059261_0033 0.55 -0.2
27,770 - Ga0059261_0033 0.55 -0.2
27,770 - Ga0059261_0033 0.55 -1.0
27,770 - Ga0059261_0033 0.55 +0.8
27,770 - Ga0059261_0033 0.55 +1.6
27,770 - Ga0059261_0033 0.55 +0.3
27,770 - Ga0059261_0033 0.55 +0.5
27,943 - +0.9
27,943 - -0.2
27,948 - -0.5
28,205 + Ga0059261_0034 0.24 -0.4
28,206 - Ga0059261_0034 0.24 +0.4
28,206 - Ga0059261_0034 0.24 -0.0
28,206 - Ga0059261_0034 0.24 +1.1
28,206 - Ga0059261_0034 0.24 -0.1
28,294 + Ga0059261_0034 0.38 +0.0
28,294 + Ga0059261_0034 0.38 -0.1
28,295 - Ga0059261_0034 0.38 +1.3
28,303 + Ga0059261_0034 0.39 -1.5
28,303 + Ga0059261_0034 0.39 -0.7
28,304 - Ga0059261_0034 0.39 +0.3
28,444 + Ga0059261_0034 0.61 -0.8
28,444 + Ga0059261_0034 0.61 -0.9
28,444 + Ga0059261_0034 0.61 -0.1
28,444 + Ga0059261_0034 0.61 -0.1
28,445 - Ga0059261_0034 0.61 +1.1
28,445 - Ga0059261_0034 0.61 +0.3
28,445 - Ga0059261_0034 0.61 +0.3
28,445 - Ga0059261_0034 0.61 +0.3
28,445 - Ga0059261_0034 0.61 -0.1
28,627 + Ga0059261_0034 0.89 +0.6
28,696 + +0.1
28,697 - +0.6
28,697 - +0.2
28,773 + +2.1
28,774 - Ga0059261_0035 0.39 +0.4
28,885 + +0.5
28,885 + Ga0059261_0035 0.71 -1.0
28,886 - Ga0059261_0035 0.71 -2.2
28,886 - Ga0059261_0035 0.71 +0.1
28,886 - Ga0059261_0035 0.71 +0.5
28,966 + +0.0
28,966 + +0.9
28,966 + +1.3
28,966 + -0.3

Or see this region's nucleotide sequence