Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22975 and BWI76_RS22980 are separated by 105 nucleotides BWI76_RS22980 and BWI76_RS22985 are separated by 211 nucleotides BWI76_RS22985 and BWI76_RS22990 are separated by 47 nucleotides BWI76_RS22990 and BWI76_RS22995 are separated by 44 nucleotides BWI76_RS22995 and BWI76_RS23000 are separated by 100 nucleotides
BWI76_RS22975: BWI76_RS22975 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 4,796,200 to 4,797,009
_RS22975
BWI76_RS22980: BWI76_RS22980 - murein transglycosylase A, at 4,797,115 to 4,798,212
_RS22980
BWI76_RS22985: BWI76_RS22985 - tRNA-Met, at 4,798,424 to 4,798,500
_RS22985
BWI76_RS22990: BWI76_RS22990 - tRNA-Met, at 4,798,548 to 4,798,624
_RS22990
BWI76_RS22995: BWI76_RS22995 - tRNA-Met, at 4,798,669 to 4,798,745
_RS22995
BWI76_RS23000: BWI76_RS23000 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 4,798,846 to 4,799,901
_RS23000
Position (kb) 4797
4798
4799 Strain fitness (log2 ratio) -1
0
1
2 at 4796.151 kb on + strand at 4796.421 kb on - strand, within BWI76_RS22975 at 4796.438 kb on + strand, within BWI76_RS22975 at 4796.649 kb on - strand, within BWI76_RS22975 at 4796.985 kb on + strand at 4797.213 kb on - strand at 4797.261 kb on + strand, within BWI76_RS22980 at 4797.261 kb on + strand, within BWI76_RS22980 at 4797.269 kb on - strand, within BWI76_RS22980 at 4797.285 kb on + strand, within BWI76_RS22980 at 4797.370 kb on + strand, within BWI76_RS22980 at 4797.424 kb on - strand, within BWI76_RS22980 at 4797.987 kb on - strand, within BWI76_RS22980 at 4797.989 kb on + strand, within BWI76_RS22980 at 4798.027 kb on - strand, within BWI76_RS22980 at 4798.112 kb on + strand at 4798.245 kb on - strand at 4799.001 kb on + strand, within BWI76_RS23000 at 4799.051 kb on - strand, within BWI76_RS23000
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 4,796,151 + -0.5 4,796,421 - BWI76_RS22975 0.27 +0.8 4,796,438 + BWI76_RS22975 0.29 +1.3 4,796,649 - BWI76_RS22975 0.55 +0.5 4,796,985 + -0.1 4,797,213 - +0.1 4,797,261 + BWI76_RS22980 0.13 -0.2 4,797,261 + BWI76_RS22980 0.13 +1.5 4,797,269 - BWI76_RS22980 0.14 -1.3 4,797,285 + BWI76_RS22980 0.15 +0.6 4,797,370 + BWI76_RS22980 0.23 -1.4 4,797,424 - BWI76_RS22980 0.28 +2.2 4,797,987 - BWI76_RS22980 0.79 +0.9 4,797,989 + BWI76_RS22980 0.80 +1.7 4,798,027 - BWI76_RS22980 0.83 +1.2 4,798,112 + -0.9 4,798,245 - +0.3 4,799,001 + BWI76_RS23000 0.15 +0.7 4,799,051 - BWI76_RS23000 0.19 +0.4
Or see this region's nucleotide sequence