Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22625 and BWI76_RS22630 overlap by 4 nucleotides BWI76_RS22630 and BWI76_RS22635 are separated by 107 nucleotides BWI76_RS22635 and BWI76_RS22640 overlap by 4 nucleotides BWI76_RS22640 and BWI76_RS22645 are separated by 65 nucleotides
BWI76_RS22625: BWI76_RS22625 - transcriptional regulator, at 4,717,038 to 4,717,457
_RS22625
BWI76_RS22630: BWI76_RS22630 - LysR family transcriptional regulator, at 4,717,454 to 4,718,341
_RS22630
BWI76_RS22635: BWI76_RS22635 - MFS transporter, at 4,718,449 to 4,719,663
_RS22635
BWI76_RS22640: BWI76_RS22640 - hypothetical protein, at 4,719,660 to 4,720,037
_RS22640
BWI76_RS22645: BWI76_RS22645 - RNA polymerase sigma factor RpoS, at 4,720,103 to 4,721,095
_RS22645
Position (kb) 4718
4719
4720 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4717.503 kb on + strand at 4717.513 kb on - strand at 4717.569 kb on + strand, within BWI76_RS22630 at 4717.715 kb on + strand, within BWI76_RS22630 at 4717.731 kb on + strand, within BWI76_RS22630 at 4717.805 kb on + strand, within BWI76_RS22630 at 4718.126 kb on - strand, within BWI76_RS22630 at 4718.250 kb on + strand, within BWI76_RS22630 at 4718.258 kb on - strand at 4718.269 kb on - strand at 4718.558 kb on + strand at 4718.763 kb on - strand, within BWI76_RS22635 at 4719.000 kb on + strand, within BWI76_RS22635 at 4719.391 kb on + strand, within BWI76_RS22635 at 4719.399 kb on - strand, within BWI76_RS22635 at 4719.458 kb on - strand, within BWI76_RS22635 at 4719.536 kb on + strand, within BWI76_RS22635 at 4719.652 kb on - strand at 4719.904 kb on + strand, within BWI76_RS22640 at 4719.917 kb on - strand, within BWI76_RS22640 at 4720.041 kb on - strand at 4720.112 kb on + strand at 4720.220 kb on + strand, within BWI76_RS22645 at 4720.220 kb on + strand, within BWI76_RS22645 at 4720.258 kb on + strand, within BWI76_RS22645 at 4720.279 kb on - strand, within BWI76_RS22645
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 4,717,503 + +0.3 4,717,513 - +0.3 4,717,569 + BWI76_RS22630 0.13 +0.6 4,717,715 + BWI76_RS22630 0.29 +0.8 4,717,731 + BWI76_RS22630 0.31 +0.4 4,717,805 + BWI76_RS22630 0.40 -2.1 4,718,126 - BWI76_RS22630 0.76 -0.5 4,718,250 + BWI76_RS22630 0.90 -0.1 4,718,258 - -1.1 4,718,269 - +0.3 4,718,558 + -0.5 4,718,763 - BWI76_RS22635 0.26 +1.1 4,719,000 + BWI76_RS22635 0.45 +1.0 4,719,391 + BWI76_RS22635 0.78 +1.0 4,719,399 - BWI76_RS22635 0.78 +0.5 4,719,458 - BWI76_RS22635 0.83 -1.1 4,719,536 + BWI76_RS22635 0.89 +1.0 4,719,652 - +0.6 4,719,904 + BWI76_RS22640 0.65 +0.9 4,719,917 - BWI76_RS22640 0.68 +0.8 4,720,041 - -0.4 4,720,112 + +1.9 4,720,220 + BWI76_RS22645 0.12 +0.1 4,720,220 + BWI76_RS22645 0.12 +0.3 4,720,258 + BWI76_RS22645 0.16 +3.1 4,720,279 - BWI76_RS22645 0.18 +1.5
Or see this region's nucleotide sequence