Experiment: D-Salicin (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11275 and BWI76_RS11280 overlap by 4 nucleotides BWI76_RS11280 and BWI76_RS11285 are separated by 84 nucleotides BWI76_RS11285 and BWI76_RS11290 are separated by 100 nucleotides
BWI76_RS11275: BWI76_RS11275 - sensor protein PhoQ, at 2,377,821 to 2,379,287
_RS11275
BWI76_RS11280: BWI76_RS11280 - two-component system response regulator PhoP, at 2,379,284 to 2,379,958
_RS11280
BWI76_RS11285: BWI76_RS11285 - transcriptional regulator, at 2,380,043 to 2,380,489
_RS11285
BWI76_RS11290: BWI76_RS11290 - MFS transporter, at 2,380,590 to 2,381,819
_RS11290
Position (kb)
2380
2381 Strain fitness (log2 ratio)
-1
0
1 at 2379.106 kb on + strand, within BWI76_RS11275 at 2379.930 kb on + strand at 2380.386 kb on - strand, within BWI76_RS11285 at 2380.818 kb on + strand, within BWI76_RS11290 at 2380.884 kb on - strand, within BWI76_RS11290 at 2381.047 kb on - strand, within BWI76_RS11290 at 2381.123 kb on - strand, within BWI76_RS11290 at 2381.207 kb on - strand, within BWI76_RS11290 at 2381.207 kb on - strand, within BWI76_RS11290
Per-strain Table
Position Strand Gene LocusTag Fraction D-Salicin (C) remove 2,379,106 + BWI76_RS11275 0.88 -0.1 2,379,930 + +0.3 2,380,386 - BWI76_RS11285 0.77 +0.6 2,380,818 + BWI76_RS11290 0.19 +0.2 2,380,884 - BWI76_RS11290 0.24 -0.1 2,381,047 - BWI76_RS11290 0.37 +0.5 2,381,123 - BWI76_RS11290 0.43 -0.0 2,381,207 - BWI76_RS11290 0.50 -0.7 2,381,207 - BWI76_RS11290 0.50 +0.7
Or see this region's nucleotide sequence