Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07765

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07755 and BWI76_RS07760 overlap by 1 nucleotidesBWI76_RS07760 and BWI76_RS07765 are separated by 0 nucleotidesBWI76_RS07765 and BWI76_RS07770 are separated by 122 nucleotidesBWI76_RS07770 and BWI76_RS07775 are separated by 39 nucleotides BWI76_RS07755: BWI76_RS07755 - isochorismatase, at 1,646,122 to 1,646,973 _RS07755 BWI76_RS07760: BWI76_RS07760 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, at 1,646,973 to 1,647,728 _RS07760 BWI76_RS07765: BWI76_RS07765 - thioesterase, at 1,647,729 to 1,648,142 _RS07765 BWI76_RS07770: BWI76_RS07770 - hypothetical protein, at 1,648,265 to 1,648,485 _RS07770 BWI76_RS07775: BWI76_RS07775 - carbon starvation protein A, at 1,648,525 to 1,650,630 _RS07775 Position (kb) 1647 1648 1649Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1647.053 kb on - strand, within BWI76_RS07760at 1647.090 kb on - strand, within BWI76_RS07760at 1647.138 kb on - strand, within BWI76_RS07760at 1647.365 kb on - strand, within BWI76_RS07760at 1647.429 kb on + strand, within BWI76_RS07760at 1647.815 kb on - strand, within BWI76_RS07765at 1647.825 kb on - strand, within BWI76_RS07765at 1647.873 kb on - strand, within BWI76_RS07765at 1648.232 kb on - strandat 1648.420 kb on - strand, within BWI76_RS07770at 1648.512 kb on + strandat 1648.553 kb on + strandat 1648.912 kb on + strand, within BWI76_RS07775at 1649.092 kb on - strand, within BWI76_RS07775

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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1,647,053 - BWI76_RS07760 0.11 +0.1
1,647,090 - BWI76_RS07760 0.15 +0.2
1,647,138 - BWI76_RS07760 0.22 +0.2
1,647,365 - BWI76_RS07760 0.52 -0.3
1,647,429 + BWI76_RS07760 0.60 +3.0
1,647,815 - BWI76_RS07765 0.21 +0.6
1,647,825 - BWI76_RS07765 0.23 +0.7
1,647,873 - BWI76_RS07765 0.35 +0.7
1,648,232 - -1.9
1,648,420 - BWI76_RS07770 0.70 -3.3
1,648,512 + -2.4
1,648,553 + -2.0
1,648,912 + BWI76_RS07775 0.18 -0.0
1,649,092 - BWI76_RS07775 0.27 +1.0

Or see this region's nucleotide sequence