Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05040

Experiment: D-Salicin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05035 and BWI76_RS05040 overlap by 1 nucleotidesBWI76_RS05040 and BWI76_RS05045 overlap by 11 nucleotidesBWI76_RS05045 and BWI76_RS05050 overlap by 8 nucleotides BWI76_RS05035: BWI76_RS05035 - prepilin peptidase, at 1,056,453 to 1,057,283 _RS05035 BWI76_RS05040: BWI76_RS05040 - type II secretion system protein N, at 1,057,283 to 1,058,041 _RS05040 BWI76_RS05045: BWI76_RS05045 - general secretion pathway protein GspM, at 1,058,031 to 1,058,516 _RS05045 BWI76_RS05050: BWI76_RS05050 - general secretion pathway protein GspL, at 1,058,509 to 1,059,705 _RS05050 Position (kb) 1057 1058 1059Strain fitness (log2 ratio) -2 -1 0 1 2at 1056.526 kb on + strandat 1056.597 kb on - strand, within BWI76_RS05035at 1057.096 kb on - strandat 1057.373 kb on + strand, within BWI76_RS05040at 1057.468 kb on + strand, within BWI76_RS05040at 1057.486 kb on - strand, within BWI76_RS05040at 1057.520 kb on + strand, within BWI76_RS05040at 1057.946 kb on - strand, within BWI76_RS05040at 1058.457 kb on - strand, within BWI76_RS05045at 1058.457 kb on - strand, within BWI76_RS05045at 1058.541 kb on + strandat 1058.616 kb on + strandat 1058.624 kb on - strandat 1058.624 kb on - strandat 1059.018 kb on + strand, within BWI76_RS05050

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Salicin (C)
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1,056,526 + +0.1
1,056,597 - BWI76_RS05035 0.17 -1.8
1,057,096 - +0.8
1,057,373 + BWI76_RS05040 0.12 +0.4
1,057,468 + BWI76_RS05040 0.24 -0.5
1,057,486 - BWI76_RS05040 0.27 +0.5
1,057,520 + BWI76_RS05040 0.31 +2.0
1,057,946 - BWI76_RS05040 0.87 +0.9
1,058,457 - BWI76_RS05045 0.88 +0.8
1,058,457 - BWI76_RS05045 0.88 -0.4
1,058,541 + -0.9
1,058,616 + -0.8
1,058,624 - +0.1
1,058,624 - +0.9
1,059,018 + BWI76_RS05050 0.43 -0.2

Or see this region's nucleotide sequence