Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30345 and AO356_30350 are separated by 193 nucleotides AO356_30350 and AO356_30355 are separated by 55 nucleotides AO356_30355 and AO356_30360 are separated by 63 nucleotides
AO356_30345: AO356_30345 - IclR family transcriptional regulator, at 7,083,591 to 7,084,343
_30345
AO356_30350: AO356_30350 - LysR family transcriptional regulator, at 7,084,537 to 7,085,469
_30350
AO356_30355: AO356_30355 - enoyl-CoA hydratase, at 7,085,525 to 7,086,319
_30355
AO356_30360: AO356_30360 - 3-hydroxypropionyl-CoA dehydratase, at 7,086,383 to 7,087,120
_30360
Position (kb) 7084
7085
7086 Strain fitness (log2 ratio) -1
0
1
2
3 at 7083.603 kb on - strand at 7083.603 kb on - strand at 7083.603 kb on - strand at 7083.603 kb on - strand at 7083.811 kb on + strand, within AO356_30345 at 7083.917 kb on + strand, within AO356_30345 at 7083.917 kb on + strand, within AO356_30345 at 7083.918 kb on - strand, within AO356_30345 at 7083.918 kb on - strand, within AO356_30345 at 7083.919 kb on + strand, within AO356_30345 at 7083.919 kb on + strand, within AO356_30345 at 7083.919 kb on + strand, within AO356_30345 at 7083.919 kb on + strand, within AO356_30345 at 7083.920 kb on - strand, within AO356_30345 at 7083.920 kb on - strand, within AO356_30345 at 7084.127 kb on + strand, within AO356_30345 at 7084.175 kb on - strand, within AO356_30345 at 7084.175 kb on - strand, within AO356_30345 at 7084.192 kb on - strand, within AO356_30345 at 7084.226 kb on + strand, within AO356_30345 at 7084.227 kb on - strand, within AO356_30345 at 7084.302 kb on - strand at 7084.325 kb on + strand at 7084.378 kb on + strand at 7084.443 kb on + strand at 7084.443 kb on + strand at 7084.444 kb on - strand at 7084.444 kb on - strand at 7084.444 kb on - strand at 7084.444 kb on - strand at 7084.444 kb on - strand at 7084.444 kb on - strand at 7084.446 kb on + strand at 7084.446 kb on + strand at 7084.446 kb on + strand at 7084.446 kb on + strand at 7084.446 kb on + strand at 7084.447 kb on - strand at 7084.447 kb on - strand at 7084.447 kb on - strand at 7084.447 kb on - strand at 7084.447 kb on - strand at 7084.447 kb on - strand at 7084.447 kb on - strand at 7084.593 kb on + strand at 7084.725 kb on + strand, within AO356_30350 at 7084.749 kb on + strand, within AO356_30350 at 7084.897 kb on + strand, within AO356_30350 at 7084.897 kb on + strand, within AO356_30350 at 7084.897 kb on + strand, within AO356_30350 at 7084.898 kb on - strand, within AO356_30350 at 7084.898 kb on - strand, within AO356_30350 at 7084.899 kb on + strand, within AO356_30350 at 7084.900 kb on - strand, within AO356_30350 at 7084.900 kb on - strand, within AO356_30350 at 7084.900 kb on - strand, within AO356_30350 at 7084.993 kb on + strand, within AO356_30350 at 7085.257 kb on + strand, within AO356_30350 at 7085.258 kb on - strand, within AO356_30350 at 7085.323 kb on + strand, within AO356_30350 at 7085.323 kb on + strand, within AO356_30350 at 7085.434 kb on + strand at 7085.447 kb on + strand at 7085.448 kb on - strand at 7085.526 kb on + strand at 7085.562 kb on + strand at 7085.562 kb on + strand at 7085.583 kb on + strand at 7085.583 kb on + strand at 7085.584 kb on - strand at 7085.584 kb on - strand at 7085.664 kb on + strand, within AO356_30355 at 7085.664 kb on + strand, within AO356_30355 at 7085.665 kb on - strand, within AO356_30355 at 7085.666 kb on + strand, within AO356_30355 at 7085.667 kb on - strand, within AO356_30355 at 7085.678 kb on + strand, within AO356_30355 at 7085.679 kb on - strand, within AO356_30355 at 7085.679 kb on - strand, within AO356_30355 at 7085.781 kb on - strand, within AO356_30355 at 7085.823 kb on - strand, within AO356_30355 at 7085.869 kb on - strand, within AO356_30355 at 7085.869 kb on - strand, within AO356_30355 at 7085.869 kb on - strand, within AO356_30355 at 7085.948 kb on - strand, within AO356_30355 at 7085.948 kb on - strand, within AO356_30355 at 7086.278 kb on + strand at 7086.279 kb on - strand at 7086.299 kb on - strand at 7086.322 kb on + strand at 7086.323 kb on - strand at 7086.323 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 7,083,603 - +0.5 7,083,603 - +1.0 7,083,603 - -0.1 7,083,603 - +0.5 7,083,811 + AO356_30345 0.29 +0.2 7,083,917 + AO356_30345 0.43 -0.4 7,083,917 + AO356_30345 0.43 -1.1 7,083,918 - AO356_30345 0.43 -0.5 7,083,918 - AO356_30345 0.43 +0.3 7,083,919 + AO356_30345 0.44 +0.7 7,083,919 + AO356_30345 0.44 +0.4 7,083,919 + AO356_30345 0.44 +0.7 7,083,919 + AO356_30345 0.44 -0.9 7,083,920 - AO356_30345 0.44 -0.7 7,083,920 - AO356_30345 0.44 +0.3 7,084,127 + AO356_30345 0.71 +0.0 7,084,175 - AO356_30345 0.78 +0.8 7,084,175 - AO356_30345 0.78 -0.9 7,084,192 - AO356_30345 0.80 +1.4 7,084,226 + AO356_30345 0.84 -0.3 7,084,227 - AO356_30345 0.84 +0.0 7,084,302 - +0.1 7,084,325 + +0.6 7,084,378 + -0.3 7,084,443 + +0.3 7,084,443 + +2.8 7,084,444 - +0.7 7,084,444 - +0.1 7,084,444 - +0.8 7,084,444 - -0.2 7,084,444 - +0.0 7,084,444 - +0.8 7,084,446 + +0.5 7,084,446 + +0.4 7,084,446 + -0.3 7,084,446 + -1.6 7,084,446 + +0.8 7,084,447 - -0.2 7,084,447 - +0.8 7,084,447 - +0.3 7,084,447 - +0.2 7,084,447 - -0.3 7,084,447 - +1.4 7,084,447 - -0.4 7,084,593 + -0.1 7,084,725 + AO356_30350 0.20 -1.7 7,084,749 + AO356_30350 0.23 +0.8 7,084,897 + AO356_30350 0.39 +0.3 7,084,897 + AO356_30350 0.39 +1.4 7,084,897 + AO356_30350 0.39 +0.4 7,084,898 - AO356_30350 0.39 +0.3 7,084,898 - AO356_30350 0.39 +0.7 7,084,899 + AO356_30350 0.39 -1.3 7,084,900 - AO356_30350 0.39 +0.6 7,084,900 - AO356_30350 0.39 +1.0 7,084,900 - AO356_30350 0.39 +0.4 7,084,993 + AO356_30350 0.49 +0.3 7,085,257 + AO356_30350 0.77 +0.1 7,085,258 - AO356_30350 0.77 +0.1 7,085,323 + AO356_30350 0.84 +1.5 7,085,323 + AO356_30350 0.84 +0.4 7,085,434 + -0.3 7,085,447 + +1.5 7,085,448 - +0.9 7,085,526 + +1.1 7,085,562 + +0.0 7,085,562 + +0.1 7,085,583 + +0.6 7,085,583 + -0.2 7,085,584 - +0.4 7,085,584 - -0.1 7,085,664 + AO356_30355 0.17 +0.2 7,085,664 + AO356_30355 0.17 +1.0 7,085,665 - AO356_30355 0.18 +0.2 7,085,666 + AO356_30355 0.18 -1.5 7,085,667 - AO356_30355 0.18 +0.6 7,085,678 + AO356_30355 0.19 +1.3 7,085,679 - AO356_30355 0.19 +0.7 7,085,679 - AO356_30355 0.19 -0.6 7,085,781 - AO356_30355 0.32 +0.3 7,085,823 - AO356_30355 0.37 +1.0 7,085,869 - AO356_30355 0.43 -0.1 7,085,869 - AO356_30355 0.43 -0.2 7,085,869 - AO356_30355 0.43 +0.3 7,085,948 - AO356_30355 0.53 +0.1 7,085,948 - AO356_30355 0.53 -0.2 7,086,278 + -1.0 7,086,279 - +0.5 7,086,299 - +0.4 7,086,322 + -0.6 7,086,323 - -0.7 7,086,323 - +0.3
Or see this region's nucleotide sequence