Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29420 and AO356_29425 are separated by 198 nucleotides AO356_29425 and AO356_29430 are separated by 35 nucleotides AO356_29430 and AO356_29435 are separated by 23 nucleotides
AO356_29420: AO356_29420 - 1-aminocyclopropane-1-carboxylate deaminase, at 6,843,658 to 6,844,674
_29420
AO356_29425: AO356_29425 - AsnC family transcriptional regulator, at 6,844,873 to 6,845,382
_29425
AO356_29430: AO356_29430 - histidine kinase, at 6,845,418 to 6,849,140
_29430
AO356_29435: AO356_29435 - ABC transporter substrate-binding protein, at 6,849,164 to 6,850,276
_29435
Position (kb)
6845
6846
6847
6848
6849
6850 Strain fitness (log2 ratio)
-2
-1
0
1 at 6844.506 kb on - strand, within AO356_29420 at 6844.656 kb on + strand at 6844.656 kb on + strand at 6844.771 kb on + strand at 6845.415 kb on + strand at 6845.427 kb on - strand at 6845.450 kb on + strand at 6845.450 kb on + strand at 6845.451 kb on - strand at 6845.459 kb on + strand at 6845.591 kb on + strand at 6845.754 kb on + strand at 6845.754 kb on + strand at 6845.895 kb on - strand, within AO356_29430 at 6845.911 kb on + strand, within AO356_29430 at 6845.911 kb on + strand, within AO356_29430 at 6845.912 kb on - strand, within AO356_29430 at 6846.337 kb on + strand, within AO356_29430 at 6846.338 kb on - strand, within AO356_29430 at 6846.412 kb on - strand, within AO356_29430 at 6846.563 kb on - strand, within AO356_29430 at 6846.563 kb on - strand, within AO356_29430 at 6846.590 kb on - strand, within AO356_29430 at 6846.590 kb on - strand, within AO356_29430 at 6846.743 kb on + strand, within AO356_29430 at 6846.743 kb on + strand, within AO356_29430 at 6846.744 kb on - strand, within AO356_29430 at 6846.744 kb on - strand, within AO356_29430 at 6846.934 kb on + strand, within AO356_29430 at 6847.470 kb on + strand, within AO356_29430 at 6849.015 kb on + strand at 6849.015 kb on + strand at 6849.016 kb on - strand at 6849.035 kb on - strand at 6849.252 kb on + strand at 6849.584 kb on - strand, within AO356_29435 at 6849.715 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.786 kb on + strand, within AO356_29435 at 6849.823 kb on - strand, within AO356_29435 at 6849.834 kb on + strand, within AO356_29435 at 6849.834 kb on + strand, within AO356_29435 at 6849.835 kb on - strand, within AO356_29435 at 6849.835 kb on - strand, within AO356_29435 at 6850.135 kb on + strand, within AO356_29435 at 6850.136 kb on - strand, within AO356_29435
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 6,844,506 - AO356_29420 0.83 -0.0 6,844,656 + +0.5 6,844,656 + +0.3 6,844,771 + +1.5 6,845,415 + +0.4 6,845,427 - +0.2 6,845,450 + +0.3 6,845,450 + -0.1 6,845,451 - -1.7 6,845,459 + +0.4 6,845,591 + -0.4 6,845,754 + -0.1 6,845,754 + +0.6 6,845,895 - AO356_29430 0.13 +0.7 6,845,911 + AO356_29430 0.13 +0.4 6,845,911 + AO356_29430 0.13 -0.4 6,845,912 - AO356_29430 0.13 +0.5 6,846,337 + AO356_29430 0.25 -1.9 6,846,338 - AO356_29430 0.25 +1.0 6,846,412 - AO356_29430 0.27 +1.1 6,846,563 - AO356_29430 0.31 -0.4 6,846,563 - AO356_29430 0.31 +0.4 6,846,590 - AO356_29430 0.31 -0.2 6,846,590 - AO356_29430 0.31 -2.5 6,846,743 + AO356_29430 0.36 +0.1 6,846,743 + AO356_29430 0.36 -1.0 6,846,744 - AO356_29430 0.36 -1.7 6,846,744 - AO356_29430 0.36 -0.6 6,846,934 + AO356_29430 0.41 +0.9 6,847,470 + AO356_29430 0.55 +0.4 6,849,015 + +0.3 6,849,015 + -0.0 6,849,016 - -1.2 6,849,035 - +0.1 6,849,252 + -0.6 6,849,584 - AO356_29435 0.38 +0.8 6,849,715 + AO356_29435 0.50 +0.7 6,849,786 + AO356_29435 0.56 -1.6 6,849,786 + AO356_29435 0.56 +0.6 6,849,786 + AO356_29435 0.56 +0.1 6,849,823 - AO356_29435 0.59 -0.5 6,849,834 + AO356_29435 0.60 -0.8 6,849,834 + AO356_29435 0.60 -0.4 6,849,835 - AO356_29435 0.60 +0.8 6,849,835 - AO356_29435 0.60 +1.3 6,850,135 + AO356_29435 0.87 -0.1 6,850,136 - AO356_29435 0.87 +0.5
Or see this region's nucleotide sequence