Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26050 and AO356_26055 are separated by 238 nucleotides AO356_26055 and AO356_26060 are separated by 9 nucleotides AO356_26060 and AO356_26065 are separated by 295 nucleotides
AO356_26050: AO356_26050 - chemotaxis protein, at 5,893,460 to 5,895,454
_26050
AO356_26055: AO356_26055 - hypothetical protein, at 5,895,693 to 5,895,881
_26055
AO356_26060: AO356_26060 - fe2+ zn2+ uptake regulation protein, at 5,895,891 to 5,896,271
_26060
AO356_26065: AO356_26065 - acyl-homoserine lactone acylase subunit beta, at 5,896,567 to 5,898,915
_26065
Position (kb)
5895
5896
5897 Strain fitness (log2 ratio)
-2
-1
0
1 at 5894.953 kb on + strand, within AO356_26050 at 5894.954 kb on - strand, within AO356_26050 at 5894.956 kb on - strand, within AO356_26050 at 5895.021 kb on + strand, within AO356_26050 at 5895.055 kb on + strand, within AO356_26050 at 5895.055 kb on + strand, within AO356_26050 at 5895.106 kb on + strand, within AO356_26050 at 5895.106 kb on + strand, within AO356_26050 at 5895.175 kb on - strand, within AO356_26050 at 5895.197 kb on + strand, within AO356_26050 at 5895.198 kb on - strand, within AO356_26050 at 5895.314 kb on - strand at 5895.423 kb on + strand at 5895.424 kb on - strand at 5895.510 kb on + strand at 5895.511 kb on - strand at 5895.512 kb on + strand at 5895.513 kb on - strand at 5895.513 kb on - strand at 5895.513 kb on - strand at 5895.515 kb on - strand at 5895.515 kb on - strand at 5895.515 kb on - strand at 5895.538 kb on + strand at 5895.539 kb on - strand at 5895.539 kb on - strand at 5895.597 kb on + strand at 5895.598 kb on - strand at 5895.598 kb on - strand at 5895.641 kb on + strand at 5895.642 kb on - strand at 5895.674 kb on + strand at 5895.675 kb on - strand at 5895.999 kb on + strand, within AO356_26060 at 5896.312 kb on + strand at 5896.312 kb on + strand at 5896.324 kb on - strand at 5896.611 kb on - strand at 5896.707 kb on + strand at 5896.756 kb on + strand at 5896.757 kb on - strand at 5896.767 kb on + strand at 5896.767 kb on + strand at 5896.976 kb on - strand, within AO356_26065
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 5,894,953 + AO356_26050 0.75 +0.4 5,894,954 - AO356_26050 0.75 +0.1 5,894,956 - AO356_26050 0.75 +0.6 5,895,021 + AO356_26050 0.78 -1.8 5,895,055 + AO356_26050 0.80 -0.0 5,895,055 + AO356_26050 0.80 +1.0 5,895,106 + AO356_26050 0.83 +0.4 5,895,106 + AO356_26050 0.83 -0.3 5,895,175 - AO356_26050 0.86 +0.5 5,895,197 + AO356_26050 0.87 +1.0 5,895,198 - AO356_26050 0.87 +0.2 5,895,314 - -0.2 5,895,423 + +0.0 5,895,424 - -0.3 5,895,510 + -1.8 5,895,511 - -0.3 5,895,512 + -0.4 5,895,513 - +0.1 5,895,513 - +1.2 5,895,513 - -1.0 5,895,515 - -0.2 5,895,515 - +0.3 5,895,515 - +0.1 5,895,538 + +0.6 5,895,539 - +0.7 5,895,539 - +0.5 5,895,597 + +0.2 5,895,598 - -0.9 5,895,598 - +0.5 5,895,641 + +1.1 5,895,642 - -0.6 5,895,674 + +0.2 5,895,675 - +0.7 5,895,999 + AO356_26060 0.28 -0.4 5,896,312 + +0.7 5,896,312 + -0.6 5,896,324 - -0.0 5,896,611 - +0.1 5,896,707 + +0.5 5,896,756 + -1.9 5,896,757 - +1.0 5,896,767 + +1.0 5,896,767 + +0.2 5,896,976 - AO356_26065 0.17 +0.6
Or see this region's nucleotide sequence