Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25185
Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ceftazidime 0.2 mg/ml |
---|---|---|---|---|---|
remove | |||||
5,696,794 | + | -0.4 | |||
5,697,444 | + | +0.3 | |||
5,697,444 | + | +0.3 | |||
5,697,444 | + | +0.5 | |||
5,697,475 | + | -0.9 | |||
5,697,475 | + | -0.3 | |||
5,697,519 | + | -0.6 | |||
5,697,836 | - | AO356_25185 | 0.23 | +1.3 | |
5,697,982 | + | AO356_25185 | 0.45 | -0.5 | |
5,697,982 | + | AO356_25185 | 0.45 | +0.0 | |
5,697,983 | - | AO356_25185 | 0.45 | +1.0 | |
5,697,983 | - | AO356_25185 | 0.45 | -0.3 | |
5,698,007 | + | AO356_25185 | 0.49 | +1.7 | |
5,698,021 | + | AO356_25185 | 0.51 | +0.6 | |
5,698,022 | - | AO356_25185 | 0.51 | -0.2 | |
5,698,102 | + | AO356_25185 | 0.64 | -0.2 | |
5,698,102 | + | AO356_25185 | 0.64 | -1.1 | |
5,698,102 | + | AO356_25185 | 0.64 | -0.7 | |
5,698,103 | - | AO356_25185 | 0.64 | -0.7 | |
5,698,103 | - | AO356_25185 | 0.64 | +0.7 | |
5,698,103 | - | AO356_25185 | 0.64 | -0.8 | |
5,698,411 | + | -1.8 | |||
5,698,412 | - | -1.1 | |||
5,698,412 | - | -0.3 | |||
5,698,538 | + | AO356_25190 | 0.11 | +0.0 | |
5,698,539 | - | AO356_25190 | 0.11 | +0.3 | |
5,698,911 | + | AO356_25190 | 0.32 | +0.6 | |
5,698,911 | + | AO356_25190 | 0.32 | +1.3 | |
5,698,911 | + | AO356_25190 | 0.32 | -0.2 | |
5,698,911 | + | AO356_25190 | 0.32 | +0.6 | |
5,698,912 | - | AO356_25190 | 0.32 | -1.1 | |
5,698,912 | - | AO356_25190 | 0.32 | +0.4 |
Or see this region's nucleotide sequence