Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24735 and AO356_24740 overlap by 4 nucleotides AO356_24740 and AO356_24745 are separated by 37 nucleotides AO356_24745 and AO356_24750 are separated by 227 nucleotides AO356_24750 and AO356_24755 overlap by 4 nucleotides
AO356_24735: AO356_24735 - TonB-dependent outer membrane receptor, at 5,596,167 to 5,596,799
_24735
AO356_24740: AO356_24740 - RNA polymerase subunit sigma-24, at 5,596,796 to 5,597,341
_24740
AO356_24745: AO356_24745 - iron dicitrate transport regulator FecR, at 5,597,379 to 5,598,320
_24745
AO356_24750: AO356_24750 - type II secretion system protein GspJ, at 5,598,548 to 5,599,159
_24750
AO356_24755: AO356_24755 - type II secretion system protein GspH, at 5,599,156 to 5,599,608
_24755
Position (kb) 5597
5598
5599 Strain fitness (log2 ratio) -1
0
1 at 5596.401 kb on + strand, within AO356_24735 at 5596.402 kb on - strand, within AO356_24735 at 5596.494 kb on + strand, within AO356_24735 at 5596.531 kb on + strand, within AO356_24735 at 5596.531 kb on + strand, within AO356_24735 at 5596.531 kb on + strand, within AO356_24735 at 5596.532 kb on - strand, within AO356_24735 at 5596.844 kb on + strand at 5596.845 kb on - strand at 5596.920 kb on - strand, within AO356_24740 at 5596.984 kb on + strand, within AO356_24740 at 5597.141 kb on + strand, within AO356_24740 at 5597.142 kb on - strand, within AO356_24740 at 5597.346 kb on - strand at 5597.712 kb on + strand, within AO356_24745 at 5597.712 kb on + strand, within AO356_24745 at 5598.036 kb on + strand, within AO356_24745 at 5598.036 kb on + strand, within AO356_24745 at 5598.492 kb on + strand at 5598.493 kb on - strand at 5598.550 kb on - strand at 5598.577 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 5,596,401 + AO356_24735 0.37 +0.6 5,596,402 - AO356_24735 0.37 +0.6 5,596,494 + AO356_24735 0.52 -0.6 5,596,531 + AO356_24735 0.58 -0.8 5,596,531 + AO356_24735 0.58 -0.4 5,596,531 + AO356_24735 0.58 -0.4 5,596,532 - AO356_24735 0.58 -0.6 5,596,844 + -0.1 5,596,845 - +0.4 5,596,920 - AO356_24740 0.23 +0.9 5,596,984 + AO356_24740 0.34 -0.8 5,597,141 + AO356_24740 0.63 +0.8 5,597,142 - AO356_24740 0.63 +0.4 5,597,346 - +0.4 5,597,712 + AO356_24745 0.35 +1.4 5,597,712 + AO356_24745 0.35 +0.5 5,598,036 + AO356_24745 0.70 +0.7 5,598,036 + AO356_24745 0.70 +0.5 5,598,492 + +0.0 5,598,493 - -0.1 5,598,550 - +0.4 5,598,577 - -0.2
Or see this region's nucleotide sequence