Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24650 and AO356_24655 overlap by 8 nucleotides AO356_24655 and AO356_24660 overlap by 4 nucleotides AO356_24660 and AO356_24665 are separated by 9 nucleotides
AO356_24650: AO356_24650 - BatB protein, at 5,575,688 to 5,576,767
_24650
AO356_24655: AO356_24655 - hypothetical protein, at 5,576,760 to 5,577,254
_24655
AO356_24660: AO356_24660 - hypothetical protein, at 5,577,251 to 5,578,195
_24660
AO356_24665: AO356_24665 - AAA family ATPase, at 5,578,205 to 5,579,164
_24665
Position (kb) 5577
5578
5579 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5576.331 kb on + strand, within AO356_24650 at 5576.582 kb on - strand, within AO356_24650 at 5576.760 kb on + strand at 5576.843 kb on - strand, within AO356_24655 at 5576.843 kb on - strand, within AO356_24655 at 5576.843 kb on - strand, within AO356_24655 at 5576.859 kb on + strand, within AO356_24655 at 5576.860 kb on - strand, within AO356_24655 at 5577.172 kb on - strand, within AO356_24655 at 5577.286 kb on - strand at 5577.294 kb on - strand at 5577.320 kb on - strand at 5578.492 kb on - strand, within AO356_24665 at 5578.515 kb on + strand, within AO356_24665 at 5578.516 kb on - strand, within AO356_24665 at 5578.701 kb on + strand, within AO356_24665 at 5578.764 kb on + strand, within AO356_24665 at 5578.764 kb on + strand, within AO356_24665 at 5578.764 kb on + strand, within AO356_24665 at 5578.764 kb on + strand, within AO356_24665 at 5578.764 kb on + strand, within AO356_24665 at 5578.765 kb on - strand, within AO356_24665 at 5578.765 kb on - strand, within AO356_24665 at 5579.053 kb on + strand, within AO356_24665 at 5579.054 kb on - strand, within AO356_24665 at 5579.054 kb on - strand, within AO356_24665 at 5579.054 kb on - strand, within AO356_24665 at 5579.054 kb on - strand, within AO356_24665
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 5,576,331 + AO356_24650 0.60 -1.2 5,576,582 - AO356_24650 0.83 -1.1 5,576,760 + -1.2 5,576,843 - AO356_24655 0.17 -1.1 5,576,843 - AO356_24655 0.17 +0.4 5,576,843 - AO356_24655 0.17 -1.8 5,576,859 + AO356_24655 0.20 -0.4 5,576,860 - AO356_24655 0.20 -0.2 5,577,172 - AO356_24655 0.83 -2.3 5,577,286 - -0.7 5,577,294 - -0.1 5,577,320 - -0.8 5,578,492 - AO356_24665 0.30 -1.5 5,578,515 + AO356_24665 0.32 -0.2 5,578,516 - AO356_24665 0.32 -2.6 5,578,701 + AO356_24665 0.52 -1.4 5,578,764 + AO356_24665 0.58 -1.9 5,578,764 + AO356_24665 0.58 +0.0 5,578,764 + AO356_24665 0.58 +0.3 5,578,764 + AO356_24665 0.58 -1.7 5,578,764 + AO356_24665 0.58 -3.2 5,578,765 - AO356_24665 0.58 -1.6 5,578,765 - AO356_24665 0.58 +0.4 5,579,053 + AO356_24665 0.88 -2.6 5,579,054 - AO356_24665 0.88 +0.8 5,579,054 - AO356_24665 0.88 -1.0 5,579,054 - AO356_24665 0.88 -0.1 5,579,054 - AO356_24665 0.88 -2.3
Or see this region's nucleotide sequence