Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24400 and AO356_24405 are separated by 179 nucleotides AO356_24405 and AO356_24410 are separated by 123 nucleotides AO356_24410 and AO356_24415 are separated by 182 nucleotides AO356_24415 and AO356_24420 are separated by 23 nucleotides
AO356_24400: AO356_24400 - universal stress protein UspA, at 5,511,122 to 5,511,985
_24400
AO356_24405: AO356_24405 - tRNA hydroxylase, at 5,512,165 to 5,512,770
_24405
AO356_24410: AO356_24410 - alanine acetyltransferase, at 5,512,894 to 5,513,382
_24410
AO356_24415: AO356_24415 - DNA-3-methyladenine glycosylase, at 5,513,565 to 5,514,182
_24415
AO356_24420: AO356_24420 - XRE family transcriptional regulator, at 5,514,206 to 5,515,288
_24420
Position (kb) 5512
5513
5514 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 5512.029 kb on + strand at 5512.029 kb on + strand at 5512.029 kb on + strand at 5512.030 kb on - strand at 5512.030 kb on - strand at 5512.030 kb on - strand at 5512.030 kb on - strand at 5512.031 kb on + strand at 5512.032 kb on - strand at 5512.032 kb on - strand at 5512.050 kb on + strand at 5512.051 kb on - strand at 5512.051 kb on - strand at 5512.057 kb on + strand at 5512.122 kb on - strand at 5512.123 kb on + strand at 5512.123 kb on + strand at 5512.123 kb on + strand at 5512.123 kb on + strand at 5512.124 kb on - strand at 5512.145 kb on + strand at 5512.146 kb on - strand at 5512.315 kb on + strand, within AO356_24405 at 5512.316 kb on - strand, within AO356_24405 at 5512.316 kb on - strand, within AO356_24405 at 5512.316 kb on - strand, within AO356_24405 at 5512.316 kb on - strand, within AO356_24405 at 5512.634 kb on - strand, within AO356_24405 at 5512.649 kb on - strand, within AO356_24405 at 5512.654 kb on + strand, within AO356_24405 at 5512.785 kb on + strand at 5512.895 kb on + strand at 5512.896 kb on - strand at 5512.896 kb on - strand at 5512.947 kb on - strand, within AO356_24410 at 5512.947 kb on - strand, within AO356_24410 at 5513.195 kb on + strand, within AO356_24410 at 5513.196 kb on - strand, within AO356_24410 at 5513.196 kb on - strand, within AO356_24410 at 5513.300 kb on + strand, within AO356_24410 at 5513.313 kb on - strand, within AO356_24410 at 5513.405 kb on + strand at 5513.405 kb on + strand at 5513.405 kb on + strand at 5513.406 kb on - strand at 5513.406 kb on - strand at 5513.566 kb on + strand at 5513.743 kb on + strand, within AO356_24415 at 5513.744 kb on - strand, within AO356_24415 at 5513.840 kb on - strand, within AO356_24415 at 5514.038 kb on - strand, within AO356_24415 at 5514.064 kb on + strand, within AO356_24415 at 5514.065 kb on - strand, within AO356_24415
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 5,512,029 + -0.1 5,512,029 + +1.1 5,512,029 + -0.2 5,512,030 - -0.4 5,512,030 - +0.1 5,512,030 - -0.8 5,512,030 - +0.9 5,512,031 + +0.1 5,512,032 - +0.8 5,512,032 - +0.5 5,512,050 + +0.5 5,512,051 - +0.4 5,512,051 - +0.5 5,512,057 + +0.1 5,512,122 - +0.9 5,512,123 + -0.0 5,512,123 + -0.1 5,512,123 + +1.1 5,512,123 + +0.2 5,512,124 - -0.8 5,512,145 + +0.9 5,512,146 - -0.7 5,512,315 + AO356_24405 0.25 +1.1 5,512,316 - AO356_24405 0.25 -0.4 5,512,316 - AO356_24405 0.25 -0.2 5,512,316 - AO356_24405 0.25 +0.8 5,512,316 - AO356_24405 0.25 +0.5 5,512,634 - AO356_24405 0.77 +1.7 5,512,649 - AO356_24405 0.80 +0.4 5,512,654 + AO356_24405 0.81 -0.0 5,512,785 + +0.1 5,512,895 + +0.3 5,512,896 - -0.3 5,512,896 - -0.8 5,512,947 - AO356_24410 0.11 -0.9 5,512,947 - AO356_24410 0.11 -0.3 5,513,195 + AO356_24410 0.62 -0.1 5,513,196 - AO356_24410 0.62 -0.0 5,513,196 - AO356_24410 0.62 -0.5 5,513,300 + AO356_24410 0.83 +0.1 5,513,313 - AO356_24410 0.86 -0.0 5,513,405 + +0.6 5,513,405 + +0.1 5,513,405 + -0.1 5,513,406 - -1.4 5,513,406 - +4.0 5,513,566 + +0.4 5,513,743 + AO356_24415 0.29 +0.8 5,513,744 - AO356_24415 0.29 -0.9 5,513,840 - AO356_24415 0.44 +1.0 5,514,038 - AO356_24415 0.77 -0.7 5,514,064 + AO356_24415 0.81 -1.5 5,514,065 - AO356_24415 0.81 -0.1
Or see this region's nucleotide sequence