Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22490 and AO356_22495 are separated by 181 nucleotides AO356_22495 and AO356_22500 overlap by 4 nucleotides AO356_22500 and AO356_22505 are separated by 125 nucleotides
AO356_22490: AO356_22490 - phosphohydrolase, at 5,026,140 to 5,027,579
_22490
AO356_22495: AO356_22495 - RNA polymerase subunit sigma-24, at 5,027,761 to 5,028,267
_22495
AO356_22500: AO356_22500 - hypothetical protein, at 5,028,264 to 5,029,190
_22500
AO356_22505: AO356_22505 - TonB-dependent receptor, at 5,029,316 to 5,031,715
_22505
Position (kb) 5028
5029
5030 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5027.389 kb on + strand, within AO356_22490 at 5027.506 kb on + strand at 5027.506 kb on + strand at 5027.506 kb on + strand at 5027.506 kb on + strand at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.018 kb on - strand, within AO356_22495 at 5028.018 kb on - strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.433 kb on + strand, within AO356_22500 at 5028.433 kb on + strand, within AO356_22500 at 5028.434 kb on - strand, within AO356_22500 at 5028.434 kb on - strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.562 kb on - strand, within AO356_22500 at 5028.562 kb on - strand, within AO356_22500 at 5029.224 kb on - strand at 5029.224 kb on - strand at 5029.466 kb on + strand at 5029.466 kb on + strand at 5029.466 kb on + strand at 5029.521 kb on - strand at 5029.778 kb on + strand, within AO356_22505 at 5029.779 kb on - strand, within AO356_22505 at 5029.779 kb on - strand, within AO356_22505 at 5029.779 kb on - strand, within AO356_22505 at 5029.779 kb on - strand, within AO356_22505 at 5030.117 kb on + strand, within AO356_22505 at 5030.117 kb on + strand, within AO356_22505 at 5030.118 kb on - strand, within AO356_22505
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 5,027,389 + AO356_22490 0.87 -0.5 5,027,506 + +1.5 5,027,506 + -0.6 5,027,506 + +0.7 5,027,506 + +0.5 5,028,017 + AO356_22495 0.50 -0.2 5,028,017 + AO356_22495 0.50 -0.7 5,028,017 + AO356_22495 0.50 -0.5 5,028,017 + AO356_22495 0.50 -0.3 5,028,017 + AO356_22495 0.50 -0.5 5,028,018 - AO356_22495 0.51 +1.3 5,028,018 - AO356_22495 0.51 -0.4 5,028,214 + AO356_22495 0.89 -1.1 5,028,214 + AO356_22495 0.89 +0.2 5,028,214 + +1.5 5,028,214 + AO356_22495 0.89 -0.1 5,028,214 + AO356_22495 0.89 +0.9 5,028,214 + AO356_22495 0.89 +0.3 5,028,214 + AO356_22495 0.89 +0.3 5,028,214 + AO356_22495 0.89 -0.9 5,028,214 + AO356_22495 0.89 +0.4 5,028,214 + AO356_22495 0.89 +0.3 5,028,215 - AO356_22495 0.90 +0.1 5,028,215 - AO356_22495 0.90 +0.0 5,028,215 - AO356_22495 0.90 -0.2 5,028,215 - AO356_22495 0.90 -0.2 5,028,215 - AO356_22495 0.90 -0.0 5,028,215 - AO356_22495 0.90 -0.0 5,028,215 - AO356_22495 0.90 +0.3 5,028,433 + AO356_22500 0.18 -0.3 5,028,433 + AO356_22500 0.18 +0.3 5,028,434 - AO356_22500 0.18 -1.9 5,028,434 - AO356_22500 0.18 +0.5 5,028,561 + AO356_22500 0.32 -0.7 5,028,561 + AO356_22500 0.32 +0.4 5,028,561 + AO356_22500 0.32 +0.5 5,028,561 + AO356_22500 0.32 -0.7 5,028,561 + AO356_22500 0.32 +0.1 5,028,561 + AO356_22500 0.32 +0.6 5,028,562 - AO356_22500 0.32 +0.2 5,028,562 - AO356_22500 0.32 +2.0 5,029,224 - +0.2 5,029,224 - -0.3 5,029,466 + +0.1 5,029,466 + +0.4 5,029,466 + -0.3 5,029,521 - -0.6 5,029,778 + AO356_22505 0.19 +0.4 5,029,779 - AO356_22505 0.19 -0.3 5,029,779 - AO356_22505 0.19 +0.4 5,029,779 - AO356_22505 0.19 +1.8 5,029,779 - AO356_22505 0.19 -0.6 5,030,117 + AO356_22505 0.33 +1.0 5,030,117 + AO356_22505 0.33 +0.1 5,030,118 - AO356_22505 0.33 -1.9
Or see this region's nucleotide sequence