Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21365 and AO356_21370 are separated by 28 nucleotides AO356_21370 and AO356_21375 are separated by 85 nucleotides AO356_21375 and AO356_21380 are separated by 382 nucleotides
AO356_21365: AO356_21365 - TetR family transcriptional regulator, at 4,789,615 to 4,790,154
_21365
AO356_21370: AO356_21370 - hydrolase, at 4,790,183 to 4,791,016
_21370
AO356_21375: AO356_21375 - 4-hydroxybenzoyl-CoA thioesterase, at 4,791,102 to 4,791,551
_21375
AO356_21380: AO356_21380 - tRNA-dihydrouridine synthase C, at 4,791,934 to 4,792,893
_21380
Position (kb) 4791
4792 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4790.202 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.206 kb on + strand at 4790.207 kb on - strand at 4790.207 kb on - strand at 4790.207 kb on - strand at 4790.207 kb on - strand at 4790.207 kb on - strand at 4790.335 kb on + strand, within AO356_21370 at 4790.336 kb on - strand, within AO356_21370 at 4790.336 kb on - strand, within AO356_21370 at 4790.462 kb on + strand, within AO356_21370 at 4790.802 kb on - strand, within AO356_21370 at 4790.970 kb on + strand at 4791.055 kb on + strand at 4791.055 kb on + strand at 4791.055 kb on + strand at 4791.055 kb on + strand at 4791.056 kb on - strand at 4791.190 kb on + strand, within AO356_21375 at 4791.192 kb on + strand, within AO356_21375 at 4791.192 kb on + strand, within AO356_21375 at 4791.192 kb on + strand, within AO356_21375 at 4791.192 kb on + strand, within AO356_21375 at 4791.193 kb on - strand, within AO356_21375 at 4791.193 kb on - strand, within AO356_21375 at 4791.193 kb on - strand, within AO356_21375 at 4791.193 kb on - strand, within AO356_21375 at 4791.193 kb on - strand, within AO356_21375 at 4791.259 kb on - strand, within AO356_21375 at 4791.306 kb on + strand, within AO356_21375 at 4791.321 kb on + strand, within AO356_21375 at 4791.322 kb on - strand, within AO356_21375 at 4791.603 kb on + strand at 4791.603 kb on + strand at 4791.603 kb on + strand at 4791.604 kb on - strand at 4791.604 kb on - strand at 4791.604 kb on - strand at 4791.604 kb on - strand at 4791.789 kb on - strand at 4791.797 kb on + strand at 4792.066 kb on + strand, within AO356_21380 at 4792.067 kb on - strand, within AO356_21380 at 4792.067 kb on - strand, within AO356_21380 at 4792.074 kb on + strand, within AO356_21380 at 4792.074 kb on + strand, within AO356_21380 at 4792.459 kb on + strand, within AO356_21380 at 4792.459 kb on + strand, within AO356_21380 at 4792.459 kb on + strand, within AO356_21380 at 4792.459 kb on + strand, within AO356_21380 at 4792.460 kb on - strand, within AO356_21380
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 4,790,202 + -0.2 4,790,206 + +0.1 4,790,206 + +0.0 4,790,206 + -1.0 4,790,206 + +0.4 4,790,206 + +0.1 4,790,206 + -0.3 4,790,206 + -0.5 4,790,206 + -1.3 4,790,206 + -2.0 4,790,206 + -0.1 4,790,207 - +0.9 4,790,207 - -0.8 4,790,207 - -0.1 4,790,207 - -1.4 4,790,207 - -0.5 4,790,335 + AO356_21370 0.18 -1.7 4,790,336 - AO356_21370 0.18 +1.2 4,790,336 - AO356_21370 0.18 -0.1 4,790,462 + AO356_21370 0.33 +0.3 4,790,802 - AO356_21370 0.74 -0.3 4,790,970 + -1.2 4,791,055 + +0.2 4,791,055 + -0.4 4,791,055 + -0.6 4,791,055 + +0.3 4,791,056 - +0.4 4,791,190 + AO356_21375 0.20 +0.6 4,791,192 + AO356_21375 0.20 +0.3 4,791,192 + AO356_21375 0.20 +2.0 4,791,192 + AO356_21375 0.20 +0.5 4,791,192 + AO356_21375 0.20 -0.1 4,791,193 - AO356_21375 0.20 +1.8 4,791,193 - AO356_21375 0.20 -0.6 4,791,193 - AO356_21375 0.20 -1.1 4,791,193 - AO356_21375 0.20 +0.1 4,791,193 - AO356_21375 0.20 +0.0 4,791,259 - AO356_21375 0.35 +0.2 4,791,306 + AO356_21375 0.45 -0.1 4,791,321 + AO356_21375 0.49 +0.6 4,791,322 - AO356_21375 0.49 -0.9 4,791,603 + -0.3 4,791,603 + -0.9 4,791,603 + -0.0 4,791,604 - -0.7 4,791,604 - +1.0 4,791,604 - -0.8 4,791,604 - +0.4 4,791,789 - +0.7 4,791,797 + +1.1 4,792,066 + AO356_21380 0.14 -0.1 4,792,067 - AO356_21380 0.14 -1.1 4,792,067 - AO356_21380 0.14 +0.8 4,792,074 + AO356_21380 0.15 +0.2 4,792,074 + AO356_21380 0.15 +0.8 4,792,459 + AO356_21380 0.55 +1.0 4,792,459 + AO356_21380 0.55 +0.9 4,792,459 + AO356_21380 0.55 -0.6 4,792,459 + AO356_21380 0.55 +0.3 4,792,460 - AO356_21380 0.55 -0.5
Or see this region's nucleotide sequence