Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20625 and AO356_20630 overlap by 1 nucleotides AO356_20630 and AO356_20635 are separated by 19 nucleotides
AO356_20625: AO356_20625 - terminase, at 4,597,767 to 4,599,521
_20625
AO356_20630: AO356_20630 - Presumed portal vertex protein, at 4,599,521 to 4,600,522
_20630
AO356_20635: AO356_20635 - hypothetical protein, at 4,600,542 to 4,601,480
_20635
Position (kb)
4599
4600
4601 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4598.595 kb on + strand, within AO356_20625 at 4598.595 kb on + strand, within AO356_20625 at 4598.632 kb on - strand, within AO356_20625 at 4599.516 kb on + strand at 4600.142 kb on + strand, within AO356_20630 at 4600.275 kb on + strand, within AO356_20630 at 4600.275 kb on + strand, within AO356_20630 at 4600.276 kb on - strand, within AO356_20630 at 4600.433 kb on - strand at 4600.433 kb on - strand at 4600.433 kb on - strand at 4600.434 kb on + strand at 4600.435 kb on - strand at 4600.711 kb on + strand, within AO356_20635 at 4600.712 kb on - strand, within AO356_20635 at 4600.771 kb on - strand, within AO356_20635 at 4600.771 kb on - strand, within AO356_20635 at 4600.775 kb on - strand, within AO356_20635 at 4600.815 kb on - strand, within AO356_20635 at 4600.828 kb on + strand, within AO356_20635 at 4600.867 kb on - strand, within AO356_20635 at 4600.972 kb on + strand, within AO356_20635 at 4600.973 kb on - strand, within AO356_20635 at 4600.996 kb on - strand, within AO356_20635 at 4601.052 kb on - strand, within AO356_20635 at 4601.070 kb on - strand, within AO356_20635 at 4601.095 kb on - strand, within AO356_20635 at 4601.220 kb on - strand, within AO356_20635 at 4601.300 kb on - strand, within AO356_20635 at 4601.346 kb on + strand, within AO356_20635 at 4601.425 kb on - strand at 4601.501 kb on + strand at 4601.510 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 4,598,595 + AO356_20625 0.47 +0.2 4,598,595 + AO356_20625 0.47 -0.2 4,598,632 - AO356_20625 0.49 +1.7 4,599,516 + -1.3 4,600,142 + AO356_20630 0.62 -1.7 4,600,275 + AO356_20630 0.75 -2.4 4,600,275 + AO356_20630 0.75 -0.0 4,600,276 - AO356_20630 0.75 +0.8 4,600,433 - -0.2 4,600,433 - +0.0 4,600,433 - -0.9 4,600,434 + +0.3 4,600,435 - +0.6 4,600,711 + AO356_20635 0.18 +0.4 4,600,712 - AO356_20635 0.18 +0.6 4,600,771 - AO356_20635 0.24 -0.5 4,600,771 - AO356_20635 0.24 -0.1 4,600,775 - AO356_20635 0.25 +2.7 4,600,815 - AO356_20635 0.29 -0.4 4,600,828 + AO356_20635 0.30 +0.5 4,600,867 - AO356_20635 0.35 -0.1 4,600,972 + AO356_20635 0.46 +0.4 4,600,973 - AO356_20635 0.46 -0.6 4,600,996 - AO356_20635 0.48 +0.3 4,601,052 - AO356_20635 0.54 +0.1 4,601,070 - AO356_20635 0.56 +0.0 4,601,095 - AO356_20635 0.59 +0.6 4,601,220 - AO356_20635 0.72 -0.0 4,601,300 - AO356_20635 0.81 -0.4 4,601,346 + AO356_20635 0.86 +0.6 4,601,425 - +0.0 4,601,501 + +0.3 4,601,510 - -0.1
Or see this region's nucleotide sequence