Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19600 and AO356_19605 overlap by 11 nucleotides AO356_19605 and AO356_19610 are separated by 143 nucleotides
AO356_19600: AO356_19600 - pyruvate kinase, at 4,394,541 to 4,395,956
_19600
AO356_19605: AO356_19605 - hydroxypyruvate reductase, at 4,395,946 to 4,397,226
_19605
AO356_19610: AO356_19610 - 2-hydroxy-3-oxopropionate reductase, at 4,397,370 to 4,398,260
_19610
Position (kb) 4395
4396
4397
4398 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4395.773 kb on - strand, within AO356_19600 at 4395.944 kb on + strand at 4396.050 kb on - strand at 4396.050 kb on - strand at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.190 kb on + strand, within AO356_19605 at 4396.191 kb on - strand, within AO356_19605 at 4396.191 kb on - strand, within AO356_19605 at 4396.614 kb on + strand, within AO356_19605 at 4396.614 kb on + strand, within AO356_19605 at 4396.615 kb on - strand, within AO356_19605 at 4396.685 kb on + strand, within AO356_19605 at 4396.686 kb on - strand, within AO356_19605 at 4396.686 kb on - strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.691 kb on + strand, within AO356_19605 at 4396.692 kb on - strand, within AO356_19605 at 4396.990 kb on + strand, within AO356_19605 at 4397.141 kb on + strand at 4397.142 kb on - strand at 4397.244 kb on + strand at 4397.245 kb on - strand at 4397.247 kb on + strand at 4397.248 kb on - strand at 4397.248 kb on - strand at 4397.250 kb on + strand at 4397.250 kb on + strand at 4397.250 kb on + strand at 4397.250 kb on + strand at 4397.250 kb on + strand at 4397.251 kb on - strand at 4397.251 kb on - strand at 4397.251 kb on - strand at 4397.251 kb on - strand at 4397.300 kb on + strand at 4397.371 kb on + strand at 4397.371 kb on + strand at 4397.372 kb on - strand at 4397.372 kb on - strand at 4397.399 kb on + strand at 4397.399 kb on + strand at 4397.399 kb on + strand at 4397.400 kb on - strand at 4397.608 kb on - strand, within AO356_19610 at 4397.914 kb on + strand, within AO356_19610 at 4397.915 kb on - strand, within AO356_19610 at 4397.915 kb on - strand, within AO356_19610
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 4,395,773 - AO356_19600 0.87 -0.6 4,395,944 + +0.3 4,396,050 - -1.3 4,396,050 - +0.4 4,396,190 + AO356_19605 0.19 +0.7 4,396,190 + AO356_19605 0.19 +0.1 4,396,190 + AO356_19605 0.19 -0.3 4,396,190 + AO356_19605 0.19 +0.6 4,396,190 + AO356_19605 0.19 +0.7 4,396,190 + AO356_19605 0.19 +0.6 4,396,190 + AO356_19605 0.19 -2.0 4,396,191 - AO356_19605 0.19 +0.5 4,396,191 - AO356_19605 0.19 -0.2 4,396,614 + AO356_19605 0.52 -0.9 4,396,614 + AO356_19605 0.52 +0.7 4,396,615 - AO356_19605 0.52 +0.5 4,396,685 + AO356_19605 0.58 +0.3 4,396,686 - AO356_19605 0.58 +0.2 4,396,686 - AO356_19605 0.58 +0.2 4,396,691 + AO356_19605 0.58 +1.8 4,396,691 + AO356_19605 0.58 -0.4 4,396,691 + AO356_19605 0.58 +0.5 4,396,691 + AO356_19605 0.58 -0.3 4,396,692 - AO356_19605 0.58 -0.0 4,396,990 + AO356_19605 0.81 +0.3 4,397,141 + +0.7 4,397,142 - -1.5 4,397,244 + -0.2 4,397,245 - -0.0 4,397,247 + +0.0 4,397,248 - +0.3 4,397,248 - +1.3 4,397,250 + -1.2 4,397,250 + +0.4 4,397,250 + -1.1 4,397,250 + +0.1 4,397,250 + +0.5 4,397,251 - +0.5 4,397,251 - +0.9 4,397,251 - +0.1 4,397,251 - +1.5 4,397,300 + -0.0 4,397,371 + -0.6 4,397,371 + -0.6 4,397,372 - +0.1 4,397,372 - +0.1 4,397,399 + +0.9 4,397,399 + -0.4 4,397,399 + +0.0 4,397,400 - +0.0 4,397,608 - AO356_19610 0.27 +0.2 4,397,914 + AO356_19610 0.61 -1.1 4,397,915 - AO356_19610 0.61 -1.3 4,397,915 - AO356_19610 0.61 +0.0
Or see this region's nucleotide sequence