Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_15010 and AO356_15015 overlap by 16 nucleotides AO356_15015 and AO356_15020 are separated by 11 nucleotides
AO356_15010: AO356_15010 - hypothetical protein, at 3,393,125 to 3,394,834
_15010
AO356_15015: AO356_15015 - hypothetical protein, at 3,394,819 to 3,395,478
_15015
AO356_15020: AO356_15020 - hypothetical protein, at 3,395,490 to 3,400,043
_15020
Position (kb)
3394
3395
3396 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3394.102 kb on - strand, within AO356_15010 at 3394.235 kb on + strand, within AO356_15010 at 3394.406 kb on - strand, within AO356_15010 at 3394.406 kb on - strand, within AO356_15010 at 3394.406 kb on - strand, within AO356_15010 at 3394.424 kb on + strand, within AO356_15010 at 3394.424 kb on + strand, within AO356_15010 at 3394.425 kb on - strand, within AO356_15010 at 3394.616 kb on + strand, within AO356_15010 at 3394.697 kb on + strand at 3394.697 kb on + strand at 3394.697 kb on + strand at 3394.698 kb on - strand at 3394.698 kb on - strand at 3394.715 kb on + strand at 3394.748 kb on + strand at 3394.749 kb on - strand at 3394.757 kb on + strand at 3394.757 kb on + strand at 3394.925 kb on + strand, within AO356_15015 at 3394.925 kb on + strand, within AO356_15015 at 3394.925 kb on + strand, within AO356_15015 at 3394.926 kb on - strand, within AO356_15015 at 3394.926 kb on - strand, within AO356_15015 at 3394.926 kb on - strand, within AO356_15015 at 3395.006 kb on - strand, within AO356_15015 at 3395.105 kb on - strand, within AO356_15015 at 3395.188 kb on + strand, within AO356_15015 at 3395.320 kb on + strand, within AO356_15015 at 3395.320 kb on + strand, within AO356_15015 at 3395.321 kb on - strand, within AO356_15015 at 3395.329 kb on + strand, within AO356_15015 at 3395.329 kb on + strand, within AO356_15015 at 3395.330 kb on - strand, within AO356_15015 at 3395.343 kb on + strand, within AO356_15015 at 3395.343 kb on + strand, within AO356_15015 at 3395.343 kb on + strand, within AO356_15015 at 3395.343 kb on + strand, within AO356_15015 at 3395.343 kb on + strand, within AO356_15015 at 3395.343 kb on + strand, within AO356_15015 at 3395.343 kb on + strand, within AO356_15015 at 3395.343 kb on + strand, within AO356_15015 at 3395.344 kb on - strand, within AO356_15015 at 3395.344 kb on - strand, within AO356_15015 at 3395.344 kb on - strand, within AO356_15015 at 3395.344 kb on - strand, within AO356_15015 at 3395.344 kb on - strand, within AO356_15015 at 3395.344 kb on - strand, within AO356_15015 at 3395.344 kb on - strand, within AO356_15015 at 3395.344 kb on - strand, within AO356_15015 at 3395.344 kb on - strand, within AO356_15015 at 3395.352 kb on + strand, within AO356_15015 at 3395.703 kb on + strand at 3395.832 kb on + strand at 3395.832 kb on + strand at 3395.833 kb on - strand at 3395.833 kb on - strand at 3395.833 kb on - strand at 3395.889 kb on + strand at 3395.890 kb on - strand at 3395.890 kb on - strand at 3395.964 kb on + strand, within AO356_15020 at 3395.964 kb on + strand, within AO356_15020 at 3395.965 kb on - strand, within AO356_15020 at 3395.965 kb on - strand, within AO356_15020 at 3395.965 kb on - strand, within AO356_15020 at 3396.120 kb on + strand, within AO356_15020 at 3396.120 kb on + strand, within AO356_15020 at 3396.121 kb on - strand, within AO356_15020 at 3396.153 kb on + strand, within AO356_15020 at 3396.154 kb on - strand, within AO356_15020 at 3396.154 kb on - strand, within AO356_15020 at 3396.154 kb on - strand, within AO356_15020 at 3396.154 kb on - strand, within AO356_15020 at 3396.154 kb on - strand, within AO356_15020 at 3396.424 kb on + strand, within AO356_15020 at 3396.444 kb on + strand, within AO356_15020 at 3396.447 kb on + strand, within AO356_15020 at 3396.448 kb on - strand, within AO356_15020 at 3396.463 kb on - strand, within AO356_15020 at 3396.477 kb on + strand, within AO356_15020 at 3396.477 kb on + strand, within AO356_15020 at 3396.478 kb on - strand, within AO356_15020
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 3,394,102 - AO356_15010 0.57 +0.8 3,394,235 + AO356_15010 0.65 +0.0 3,394,406 - AO356_15010 0.75 -0.1 3,394,406 - AO356_15010 0.75 -0.5 3,394,406 - AO356_15010 0.75 -0.9 3,394,424 + AO356_15010 0.76 +0.5 3,394,424 + AO356_15010 0.76 -0.8 3,394,425 - AO356_15010 0.76 -2.4 3,394,616 + AO356_15010 0.87 +1.5 3,394,697 + +0.4 3,394,697 + +0.6 3,394,697 + -0.6 3,394,698 - -1.3 3,394,698 - -0.3 3,394,715 + +1.1 3,394,748 + +1.3 3,394,749 - +3.0 3,394,757 + -0.5 3,394,757 + +1.2 3,394,925 + AO356_15015 0.16 +0.6 3,394,925 + AO356_15015 0.16 +0.6 3,394,925 + AO356_15015 0.16 -0.3 3,394,926 - AO356_15015 0.16 +0.6 3,394,926 - AO356_15015 0.16 -0.7 3,394,926 - AO356_15015 0.16 +0.2 3,395,006 - AO356_15015 0.28 +0.5 3,395,105 - AO356_15015 0.43 +0.2 3,395,188 + AO356_15015 0.56 +1.2 3,395,320 + AO356_15015 0.76 +0.4 3,395,320 + AO356_15015 0.76 +0.3 3,395,321 - AO356_15015 0.76 -1.0 3,395,329 + AO356_15015 0.77 -1.0 3,395,329 + AO356_15015 0.77 -0.5 3,395,330 - AO356_15015 0.77 +0.4 3,395,343 + AO356_15015 0.79 +0.6 3,395,343 + AO356_15015 0.79 +0.0 3,395,343 + AO356_15015 0.79 -0.7 3,395,343 + AO356_15015 0.79 -0.0 3,395,343 + AO356_15015 0.79 +1.0 3,395,343 + AO356_15015 0.79 -1.3 3,395,343 + AO356_15015 0.79 +0.3 3,395,343 + AO356_15015 0.79 -0.0 3,395,344 - AO356_15015 0.80 +0.1 3,395,344 - AO356_15015 0.80 -0.0 3,395,344 - AO356_15015 0.80 +0.8 3,395,344 - AO356_15015 0.80 +0.3 3,395,344 - AO356_15015 0.80 +0.3 3,395,344 - AO356_15015 0.80 -0.7 3,395,344 - AO356_15015 0.80 -0.6 3,395,344 - AO356_15015 0.80 +0.3 3,395,344 - AO356_15015 0.80 +0.1 3,395,352 + AO356_15015 0.81 +0.4 3,395,703 + -0.8 3,395,832 + -0.0 3,395,832 + -0.2 3,395,833 - -0.0 3,395,833 - +0.8 3,395,833 - +0.1 3,395,889 + +0.1 3,395,890 - +1.1 3,395,890 - -1.7 3,395,964 + AO356_15020 0.10 -0.2 3,395,964 + AO356_15020 0.10 -0.5 3,395,965 - AO356_15020 0.10 -0.1 3,395,965 - AO356_15020 0.10 -0.1 3,395,965 - AO356_15020 0.10 -0.1 3,396,120 + AO356_15020 0.14 +0.0 3,396,120 + AO356_15020 0.14 +0.7 3,396,121 - AO356_15020 0.14 -0.4 3,396,153 + AO356_15020 0.15 -0.4 3,396,154 - AO356_15020 0.15 +0.4 3,396,154 - AO356_15020 0.15 +0.8 3,396,154 - AO356_15020 0.15 +0.5 3,396,154 - AO356_15020 0.15 -0.6 3,396,154 - AO356_15020 0.15 +0.3 3,396,424 + AO356_15020 0.21 +0.5 3,396,444 + AO356_15020 0.21 +0.2 3,396,447 + AO356_15020 0.21 +0.1 3,396,448 - AO356_15020 0.21 -0.1 3,396,463 - AO356_15020 0.21 +0.8 3,396,477 + AO356_15020 0.22 +0.3 3,396,477 + AO356_15020 0.22 -0.4 3,396,478 - AO356_15020 0.22 +0.4
Or see this region's nucleotide sequence