Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_05980 and AO356_05985 overlap by 4 nucleotides AO356_05985 and AO356_05990 are separated by 105 nucleotides AO356_05990 and AO356_05995 are separated by 3 nucleotides AO356_05995 and AO356_06000 are separated by 45 nucleotides
AO356_05980: AO356_05980 - UDP-N-acetylglucosamine acyltransferase, at 1,326,304 to 1,327,080
_05980
AO356_05985: AO356_05985 - 3-hydroxyacyl-ACP dehydratase, at 1,327,077 to 1,327,517
_05985
AO356_05990: AO356_05990 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase, at 1,327,623 to 1,328,678
_05990
AO356_05995: AO356_05995 - hypothetical protein, at 1,328,682 to 1,329,185
_05995
AO356_06000: AO356_06000 - outer membrane protein assembly factor BamA, at 1,329,231 to 1,331,606
_06000
Position (kb) 1327
1328
1329 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1327.611 kb on - strand at 1327.622 kb on - strand at 1328.684 kb on - strand at 1328.729 kb on - strand at 1329.059 kb on - strand, within AO356_05995 at 1329.059 kb on - strand, within AO356_05995 at 1329.059 kb on - strand, within AO356_05995 at 1329.098 kb on - strand, within AO356_05995 at 1329.180 kb on - strand at 1329.180 kb on - strand at 1329.180 kb on - strand at 1329.180 kb on - strand at 1329.233 kb on - strand at 1329.233 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 1,327,611 - +0.4 1,327,622 - -0.0 1,328,684 - -1.8 1,328,729 - +0.0 1,329,059 - AO356_05995 0.75 -1.1 1,329,059 - AO356_05995 0.75 -1.5 1,329,059 - AO356_05995 0.75 -2.5 1,329,098 - AO356_05995 0.83 -2.5 1,329,180 - -0.1 1,329,180 - -0.9 1,329,180 - -3.5 1,329,180 - -0.9 1,329,233 - +0.6 1,329,233 - -0.4
Or see this region's nucleotide sequence