Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_05965 and AO356_05970 are separated by 201 nucleotides AO356_05970 and AO356_05975 overlap by 4 nucleotides AO356_05975 and AO356_05980 are separated by 2 nucleotides AO356_05980 and AO356_05985 overlap by 4 nucleotides
AO356_05965: AO356_05965 - DNA polymerase III subunit alpha, at 1,320,798 to 1,324,319
_05965
AO356_05970: AO356_05970 - ribonuclease HII, at 1,324,521 to 1,325,174
_05970
AO356_05975: AO356_05975 - lipid-A-disaccharide synthase, at 1,325,171 to 1,326,301
_05975
AO356_05980: AO356_05980 - UDP-N-acetylglucosamine acyltransferase, at 1,326,304 to 1,327,080
_05980
AO356_05985: AO356_05985 - 3-hydroxyacyl-ACP dehydratase, at 1,327,077 to 1,327,517
_05985
Position (kb)
1325
1326
1327 Strain fitness (log2 ratio)
-1
0
1 at 1324.334 kb on - strand at 1324.363 kb on + strand at 1324.473 kb on - strand at 1324.564 kb on + strand at 1324.564 kb on + strand at 1324.565 kb on - strand at 1324.565 kb on - strand at 1324.565 kb on - strand at 1324.565 kb on - strand at 1324.565 kb on - strand at 1324.676 kb on - strand, within AO356_05970 at 1324.684 kb on + strand, within AO356_05970 at 1324.684 kb on + strand, within AO356_05970 at 1324.685 kb on - strand, within AO356_05970 at 1324.685 kb on - strand, within AO356_05970 at 1324.899 kb on - strand, within AO356_05970 at 1325.157 kb on + strand at 1325.157 kb on + strand at 1325.157 kb on + strand at 1325.157 kb on + strand at 1325.157 kb on + strand at 1325.157 kb on + strand at 1325.158 kb on - strand at 1325.158 kb on - strand at 1325.158 kb on - strand at 1325.163 kb on + strand at 1325.163 kb on + strand at 1325.163 kb on + strand at 1325.163 kb on + strand at 1325.163 kb on + strand at 1325.163 kb on + strand at 1325.164 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 1,324,334 - +0.1 1,324,363 + +0.8 1,324,473 - +0.5 1,324,564 + +0.2 1,324,564 + -1.0 1,324,565 - +1.6 1,324,565 - +0.0 1,324,565 - +0.9 1,324,565 - -0.6 1,324,565 - -0.3 1,324,676 - AO356_05970 0.24 +0.4 1,324,684 + AO356_05970 0.25 +0.7 1,324,684 + AO356_05970 0.25 +0.2 1,324,685 - AO356_05970 0.25 +0.4 1,324,685 - AO356_05970 0.25 +0.3 1,324,899 - AO356_05970 0.58 -0.1 1,325,157 + +0.4 1,325,157 + +0.1 1,325,157 + +0.9 1,325,157 + +1.3 1,325,157 + -0.8 1,325,157 + +1.4 1,325,158 - -0.1 1,325,158 - -0.3 1,325,158 - +0.2 1,325,163 + -1.3 1,325,163 + -0.9 1,325,163 + -0.3 1,325,163 + +0.6 1,325,163 + -0.0 1,325,163 + +0.2 1,325,164 - +0.2
Or see this region's nucleotide sequence