Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04160 and AO356_04165 are separated by 44 nucleotides AO356_04165 and AO356_04170 are separated by 206 nucleotides AO356_04170 and AO356_04175 are separated by 501 nucleotides
AO356_04160: AO356_04160 - hypothetical protein, at 935,097 to 935,369
_04160
AO356_04165: AO356_04165 - hypothetical protein, at 935,414 to 935,974
_04165
AO356_04170: AO356_04170 - hypothetical protein, at 936,181 to 936,360
_04170
AO356_04175: AO356_04175 - hypothetical protein, at 936,862 to 937,338
_04175
Position (kb) 936
937 Strain fitness (log2 ratio) -2
-1
0
1 at 935.291 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.300 kb on - strand, within AO356_04160 at 935.387 kb on + strand at 935.387 kb on + strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.388 kb on - strand at 935.403 kb on + strand at 935.403 kb on + strand at 935.412 kb on - strand at 935.415 kb on + strand at 935.444 kb on + strand at 935.445 kb on - strand at 935.554 kb on + strand, within AO356_04165 at 935.687 kb on + strand, within AO356_04165 at 935.687 kb on + strand, within AO356_04165 at 935.687 kb on + strand, within AO356_04165 at 935.688 kb on - strand, within AO356_04165 at 935.691 kb on + strand, within AO356_04165 at 935.692 kb on - strand, within AO356_04165 at 935.692 kb on - strand, within AO356_04165 at 935.722 kb on + strand, within AO356_04165 at 935.723 kb on - strand, within AO356_04165 at 935.724 kb on + strand, within AO356_04165 at 935.724 kb on + strand, within AO356_04165 at 935.725 kb on - strand, within AO356_04165 at 935.725 kb on - strand, within AO356_04165 at 935.748 kb on + strand, within AO356_04165 at 935.748 kb on + strand, within AO356_04165 at 935.884 kb on - strand, within AO356_04165 at 935.886 kb on + strand, within AO356_04165 at 935.886 kb on + strand, within AO356_04165 at 935.887 kb on - strand, within AO356_04165 at 935.887 kb on - strand, within AO356_04165 at 936.262 kb on - strand, within AO356_04170 at 936.927 kb on + strand, within AO356_04175 at 936.928 kb on - strand, within AO356_04175 at 936.968 kb on - strand, within AO356_04175 at 937.023 kb on + strand, within AO356_04175 at 937.050 kb on + strand, within AO356_04175 at 937.181 kb on + strand, within AO356_04175 at 937.181 kb on + strand, within AO356_04175 at 937.181 kb on + strand, within AO356_04175 at 937.182 kb on - strand, within AO356_04175 at 937.182 kb on - strand, within AO356_04175 at 937.182 kb on - strand, within AO356_04175 at 937.272 kb on + strand, within AO356_04175 at 937.311 kb on + strand at 937.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 935,291 - AO356_04160 0.71 +0.6 935,300 - AO356_04160 0.74 -0.2 935,300 - AO356_04160 0.74 +1.0 935,300 - AO356_04160 0.74 +0.2 935,300 - AO356_04160 0.74 +0.9 935,300 - AO356_04160 0.74 +1.0 935,387 + +0.7 935,387 + +0.0 935,388 - -0.2 935,388 - +0.0 935,388 - -0.2 935,388 - -0.5 935,388 - +0.1 935,403 + -0.5 935,403 + -0.9 935,412 - -1.6 935,415 + -0.1 935,444 + +0.2 935,445 - +0.4 935,554 + AO356_04165 0.25 +0.5 935,687 + AO356_04165 0.49 +0.1 935,687 + AO356_04165 0.49 +0.1 935,687 + AO356_04165 0.49 +0.5 935,688 - AO356_04165 0.49 -0.6 935,691 + AO356_04165 0.49 +0.2 935,692 - AO356_04165 0.50 +1.6 935,692 - AO356_04165 0.50 +0.5 935,722 + AO356_04165 0.55 -0.4 935,723 - AO356_04165 0.55 +0.4 935,724 + AO356_04165 0.55 -2.0 935,724 + AO356_04165 0.55 +0.9 935,725 - AO356_04165 0.55 -0.4 935,725 - AO356_04165 0.55 -0.8 935,748 + AO356_04165 0.60 -1.0 935,748 + AO356_04165 0.60 -1.0 935,884 - AO356_04165 0.84 +0.0 935,886 + AO356_04165 0.84 -0.1 935,886 + AO356_04165 0.84 +0.1 935,887 - AO356_04165 0.84 +0.3 935,887 - AO356_04165 0.84 -0.2 936,262 - AO356_04170 0.45 -0.6 936,927 + AO356_04175 0.14 +0.1 936,928 - AO356_04175 0.14 +1.4 936,968 - AO356_04175 0.22 +0.4 937,023 + AO356_04175 0.34 -0.9 937,050 + AO356_04175 0.39 -0.4 937,181 + AO356_04175 0.67 -0.6 937,181 + AO356_04175 0.67 +0.7 937,181 + AO356_04175 0.67 +0.9 937,182 - AO356_04175 0.67 +0.6 937,182 - AO356_04175 0.67 +1.1 937,182 - AO356_04175 0.67 +0.3 937,272 + AO356_04175 0.86 +0.7 937,311 + +0.6 937,312 - -0.1
Or see this region's nucleotide sequence