Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03245 and AO356_03250 are separated by 249 nucleotides AO356_03250 and AO356_03255 are separated by 100 nucleotides AO356_03255 and AO356_03260 are separated by 235 nucleotides
AO356_03245: AO356_03245 - hypothetical protein, at 720,210 to 720,518
_03245
AO356_03250: AO356_03250 - DoxX family protein, at 720,768 to 721,202
_03250
AO356_03255: AO356_03255 - glycosylase, at 721,303 to 722,724
_03255
AO356_03260: AO356_03260 - hydrolase TatD, at 722,960 to 723,766
_03260
Position (kb) 721
722
723 Strain fitness (log2 ratio) -2
-1
0
1
2 at 720.410 kb on - strand, within AO356_03245 at 720.410 kb on - strand, within AO356_03245 at 720.495 kb on + strand at 720.495 kb on + strand at 720.495 kb on + strand at 720.495 kb on + strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.496 kb on - strand at 720.616 kb on - strand at 720.652 kb on + strand at 720.652 kb on + strand at 720.652 kb on + strand at 720.653 kb on - strand at 720.653 kb on - strand at 720.653 kb on - strand at 720.660 kb on + strand at 720.660 kb on + strand at 720.684 kb on + strand at 720.685 kb on - strand at 720.723 kb on + strand at 720.736 kb on + strand at 720.736 kb on + strand at 720.736 kb on + strand at 720.737 kb on - strand at 720.737 kb on - strand at 720.827 kb on + strand, within AO356_03250 at 720.828 kb on - strand, within AO356_03250 at 720.860 kb on - strand, within AO356_03250 at 721.021 kb on + strand, within AO356_03250 at 721.021 kb on + strand, within AO356_03250 at 721.021 kb on + strand, within AO356_03250 at 721.022 kb on - strand, within AO356_03250 at 721.122 kb on + strand, within AO356_03250 at 721.122 kb on + strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.123 kb on - strand, within AO356_03250 at 721.202 kb on + strand at 721.202 kb on + strand at 721.203 kb on - strand at 721.203 kb on - strand at 721.203 kb on - strand at 721.203 kb on - strand at 721.221 kb on + strand at 721.221 kb on + strand at 721.222 kb on - strand at 721.222 kb on - strand at 721.222 kb on - strand at 721.225 kb on - strand at 721.309 kb on - strand at 721.370 kb on + strand at 721.370 kb on + strand at 721.371 kb on - strand at 721.371 kb on - strand at 721.371 kb on - strand at 721.373 kb on + strand at 721.374 kb on - strand at 721.374 kb on - strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.377 kb on + strand at 721.378 kb on - strand at 721.378 kb on - strand at 721.386 kb on + strand at 721.387 kb on - strand at 721.389 kb on + strand at 721.389 kb on + strand at 721.389 kb on + strand at 721.389 kb on + strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.390 kb on - strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.394 kb on + strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.395 kb on - strand at 721.414 kb on + strand at 721.414 kb on + strand at 721.415 kb on - strand at 721.523 kb on + strand, within AO356_03255 at 721.524 kb on - strand, within AO356_03255 at 721.524 kb on - strand, within AO356_03255 at 721.524 kb on - strand, within AO356_03255 at 721.604 kb on + strand, within AO356_03255 at 721.604 kb on + strand, within AO356_03255 at 721.604 kb on + strand, within AO356_03255 at 721.604 kb on + strand, within AO356_03255 at 721.621 kb on + strand, within AO356_03255 at 721.621 kb on + strand, within AO356_03255 at 721.622 kb on - strand, within AO356_03255 at 721.622 kb on - strand, within AO356_03255 at 721.865 kb on + strand, within AO356_03255 at 721.865 kb on + strand, within AO356_03255 at 721.866 kb on - strand, within AO356_03255 at 721.877 kb on + strand, within AO356_03255 at 721.877 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.919 kb on + strand, within AO356_03255 at 721.920 kb on - strand, within AO356_03255 at 721.920 kb on - strand, within AO356_03255 at 721.920 kb on - strand, within AO356_03255 at 721.920 kb on - strand, within AO356_03255 at 721.983 kb on - strand, within AO356_03255 at 722.008 kb on + strand, within AO356_03255 at 722.008 kb on + strand, within AO356_03255 at 722.008 kb on + strand, within AO356_03255 at 722.009 kb on - strand, within AO356_03255 at 722.133 kb on + strand, within AO356_03255 at 722.134 kb on - strand, within AO356_03255 at 722.270 kb on + strand, within AO356_03255 at 722.317 kb on - strand, within AO356_03255 at 722.451 kb on + strand, within AO356_03255 at 722.452 kb on - strand, within AO356_03255 at 722.452 kb on - strand, within AO356_03255 at 722.452 kb on - strand, within AO356_03255 at 722.486 kb on + strand, within AO356_03255 at 722.486 kb on + strand, within AO356_03255 at 722.486 kb on + strand, within AO356_03255 at 722.487 kb on - strand, within AO356_03255 at 722.487 kb on - strand, within AO356_03255 at 722.487 kb on - strand, within AO356_03255 at 722.701 kb on + strand at 722.701 kb on + strand at 722.701 kb on + strand at 722.701 kb on + strand at 722.702 kb on - strand at 722.702 kb on - strand at 722.702 kb on - strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.707 kb on + strand at 722.708 kb on - strand at 722.708 kb on - strand at 722.708 kb on - strand at 722.708 kb on - strand at 722.708 kb on - strand at 722.708 kb on - strand at 722.840 kb on + strand at 722.842 kb on + strand at 722.842 kb on + strand at 722.843 kb on - strand at 722.851 kb on + strand at 722.851 kb on + strand at 722.852 kb on - strand at 722.852 kb on - strand at 722.852 kb on - strand at 722.852 kb on - strand at 722.852 kb on - strand at 722.891 kb on + strand at 722.892 kb on - strand at 722.927 kb on + strand at 722.953 kb on + strand at 722.954 kb on - strand at 723.038 kb on + strand at 723.038 kb on + strand at 723.038 kb on + strand at 723.039 kb on - strand at 723.342 kb on + strand, within AO356_03260 at 723.467 kb on + strand, within AO356_03260 at 723.487 kb on + strand, within AO356_03260 at 723.487 kb on + strand, within AO356_03260 at 723.487 kb on + strand, within AO356_03260 at 723.488 kb on - strand, within AO356_03260 at 723.488 kb on - strand, within AO356_03260 at 723.493 kb on + strand, within AO356_03260 at 723.494 kb on - strand, within AO356_03260 at 723.494 kb on - strand, within AO356_03260 at 723.494 kb on - strand, within AO356_03260 at 723.494 kb on - strand, within AO356_03260 at 723.555 kb on + strand, within AO356_03260 at 723.594 kb on - strand, within AO356_03260 at 723.607 kb on + strand, within AO356_03260 at 723.650 kb on + strand, within AO356_03260 at 723.651 kb on - strand, within AO356_03260
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 720,410 - AO356_03245 0.65 -0.2 720,410 - AO356_03245 0.65 -0.6 720,495 + -0.1 720,495 + -0.1 720,495 + +0.3 720,495 + +0.4 720,496 - -0.8 720,496 - +0.2 720,496 - -1.4 720,496 - -0.7 720,496 - +0.6 720,496 - +1.2 720,496 - -1.4 720,616 - -1.0 720,652 + +0.4 720,652 + +0.5 720,652 + -0.1 720,653 - -0.1 720,653 - +0.6 720,653 - -0.3 720,660 + -0.4 720,660 + -0.6 720,684 + -0.9 720,685 - -0.7 720,723 + -0.9 720,736 + +1.2 720,736 + +0.8 720,736 + -0.5 720,737 - -0.3 720,737 - -0.2 720,827 + AO356_03250 0.14 +0.1 720,828 - AO356_03250 0.14 +0.1 720,860 - AO356_03250 0.21 -0.5 721,021 + AO356_03250 0.58 +1.9 721,021 + AO356_03250 0.58 +0.1 721,021 + AO356_03250 0.58 +1.3 721,022 - AO356_03250 0.58 +1.6 721,122 + AO356_03250 0.81 +0.1 721,122 + AO356_03250 0.81 -1.3 721,123 - AO356_03250 0.82 +0.8 721,123 - AO356_03250 0.82 +0.5 721,123 - AO356_03250 0.82 +0.4 721,123 - AO356_03250 0.82 +0.1 721,202 + +0.6 721,202 + +0.2 721,203 - +0.8 721,203 - +0.5 721,203 - -0.6 721,203 - +0.6 721,221 + -0.1 721,221 + -0.0 721,222 - -0.3 721,222 - -0.2 721,222 - +0.5 721,225 - -0.8 721,309 - +0.2 721,370 + -0.5 721,370 + -1.8 721,371 - -1.1 721,371 - +1.3 721,371 - -1.2 721,373 + -1.4 721,374 - -0.5 721,374 - -0.3 721,377 + +0.1 721,377 + +0.6 721,377 + +0.5 721,377 + +0.2 721,377 + +0.2 721,378 - -2.4 721,378 - +0.6 721,386 + -0.2 721,387 - +1.3 721,389 + -0.4 721,389 + +0.4 721,389 + +0.5 721,389 + +1.4 721,390 - -0.0 721,390 - +0.2 721,390 - -0.2 721,390 - -0.7 721,390 - -0.7 721,390 - +1.0 721,394 + +0.9 721,394 + -1.2 721,394 + -2.3 721,394 + +0.2 721,394 + -0.3 721,394 + +0.3 721,395 - -0.6 721,395 - -0.6 721,395 - -0.2 721,395 - +0.4 721,395 - -1.1 721,414 + -0.9 721,414 + +0.4 721,415 - -0.3 721,523 + AO356_03255 0.15 +0.2 721,524 - AO356_03255 0.16 -0.5 721,524 - AO356_03255 0.16 -0.2 721,524 - AO356_03255 0.16 -0.3 721,604 + AO356_03255 0.21 -0.0 721,604 + AO356_03255 0.21 +0.0 721,604 + AO356_03255 0.21 -0.8 721,604 + AO356_03255 0.21 +0.5 721,621 + AO356_03255 0.22 +0.7 721,621 + AO356_03255 0.22 -0.4 721,622 - AO356_03255 0.22 +0.7 721,622 - AO356_03255 0.22 -0.9 721,865 + AO356_03255 0.40 -0.4 721,865 + AO356_03255 0.40 +0.5 721,866 - AO356_03255 0.40 -0.1 721,877 + AO356_03255 0.40 +0.5 721,877 + AO356_03255 0.40 -0.1 721,919 + AO356_03255 0.43 -0.3 721,919 + AO356_03255 0.43 +0.4 721,919 + AO356_03255 0.43 +0.1 721,919 + AO356_03255 0.43 +0.4 721,919 + AO356_03255 0.43 -0.2 721,919 + AO356_03255 0.43 -0.7 721,919 + AO356_03255 0.43 -0.6 721,919 + AO356_03255 0.43 +0.5 721,920 - AO356_03255 0.43 -0.1 721,920 - AO356_03255 0.43 -0.6 721,920 - AO356_03255 0.43 +0.6 721,920 - AO356_03255 0.43 +0.2 721,983 - AO356_03255 0.48 +0.6 722,008 + AO356_03255 0.50 +0.3 722,008 + AO356_03255 0.50 +1.2 722,008 + AO356_03255 0.50 +1.1 722,009 - AO356_03255 0.50 -1.6 722,133 + AO356_03255 0.58 +0.1 722,134 - AO356_03255 0.58 -0.5 722,270 + AO356_03255 0.68 +0.1 722,317 - AO356_03255 0.71 -0.0 722,451 + AO356_03255 0.81 +0.6 722,452 - AO356_03255 0.81 +0.5 722,452 - AO356_03255 0.81 -0.4 722,452 - AO356_03255 0.81 -0.6 722,486 + AO356_03255 0.83 -0.9 722,486 + AO356_03255 0.83 +1.0 722,486 + AO356_03255 0.83 +0.2 722,487 - AO356_03255 0.83 +0.2 722,487 - AO356_03255 0.83 -0.9 722,487 - AO356_03255 0.83 +0.1 722,701 + +1.0 722,701 + -0.7 722,701 + +0.2 722,701 + +1.0 722,702 - -0.2 722,702 - -1.5 722,702 - -0.1 722,707 + +0.6 722,707 + +0.9 722,707 + +1.3 722,707 + +0.7 722,707 + -0.1 722,707 + +1.3 722,707 + +0.5 722,708 - +1.2 722,708 - +0.1 722,708 - +1.0 722,708 - -0.4 722,708 - +0.9 722,708 - +0.1 722,840 + +0.1 722,842 + +0.1 722,842 + +0.6 722,843 - +0.6 722,851 + +0.6 722,851 + +0.3 722,852 - +0.6 722,852 - +0.1 722,852 - +0.4 722,852 - -0.2 722,852 - +0.5 722,891 + -0.5 722,892 - +0.1 722,927 + -0.5 722,953 + -0.3 722,954 - +0.6 723,038 + +0.3 723,038 + +0.4 723,038 + -0.8 723,039 - +0.1 723,342 + AO356_03260 0.47 +1.1 723,467 + AO356_03260 0.63 -2.5 723,487 + AO356_03260 0.65 +1.4 723,487 + AO356_03260 0.65 +1.3 723,487 + AO356_03260 0.65 -0.0 723,488 - AO356_03260 0.65 +0.1 723,488 - AO356_03260 0.65 +0.7 723,493 + AO356_03260 0.66 -1.4 723,494 - AO356_03260 0.66 +0.4 723,494 - AO356_03260 0.66 +0.3 723,494 - AO356_03260 0.66 -0.5 723,494 - AO356_03260 0.66 -0.6 723,555 + AO356_03260 0.74 +0.2 723,594 - AO356_03260 0.79 -0.5 723,607 + AO356_03260 0.80 +0.6 723,650 + AO356_03260 0.86 +0.7 723,651 - AO356_03260 0.86 +0.8
Or see this region's nucleotide sequence