Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02735 and AO356_02740 overlap by 4 nucleotides AO356_02740 and AO356_02745 are separated by 4 nucleotides AO356_02745 and AO356_02750 are separated by 245 nucleotides
AO356_02735: AO356_02735 - type III secretion regulator InvE, at 599,242 to 600,348
_02735
AO356_02740: AO356_02740 - protein InvG, at 600,345 to 602,000
_02740
AO356_02745: AO356_02745 - transcriptional regulator, at 602,005 to 602,742
_02745
AO356_02750: AO356_02750 - nitrate transporter, at 602,988 to 604,199
_02750
Position (kb) 600
601
602
603 Strain fitness (log2 ratio) -2
-1
0
1
2 at 599.726 kb on + strand, within AO356_02735 at 599.727 kb on - strand, within AO356_02735 at 599.747 kb on + strand, within AO356_02735 at 599.790 kb on - strand, within AO356_02735 at 600.368 kb on - strand at 600.508 kb on + strand at 600.509 kb on - strand at 600.784 kb on + strand, within AO356_02740 at 600.832 kb on + strand, within AO356_02740 at 600.832 kb on + strand, within AO356_02740 at 600.833 kb on - strand, within AO356_02740 at 600.833 kb on - strand, within AO356_02740 at 600.918 kb on - strand, within AO356_02740 at 601.426 kb on + strand, within AO356_02740 at 601.546 kb on + strand, within AO356_02740 at 601.546 kb on + strand, within AO356_02740 at 601.546 kb on + strand, within AO356_02740 at 601.702 kb on + strand, within AO356_02740 at 601.702 kb on + strand, within AO356_02740 at 601.702 kb on + strand, within AO356_02740 at 601.702 kb on + strand, within AO356_02740 at 601.703 kb on - strand, within AO356_02740 at 601.703 kb on - strand, within AO356_02740 at 601.708 kb on + strand, within AO356_02740 at 601.907 kb on + strand at 601.907 kb on + strand at 601.908 kb on - strand at 601.909 kb on + strand at 601.909 kb on + strand at 601.910 kb on - strand at 601.910 kb on - strand at 602.021 kb on + strand at 602.022 kb on - strand at 602.152 kb on + strand, within AO356_02745 at 602.290 kb on - strand, within AO356_02745 at 602.360 kb on + strand, within AO356_02745 at 602.393 kb on + strand, within AO356_02745 at 602.393 kb on + strand, within AO356_02745 at 602.393 kb on + strand, within AO356_02745 at 602.394 kb on - strand, within AO356_02745 at 602.394 kb on - strand, within AO356_02745 at 602.503 kb on - strand, within AO356_02745 at 602.839 kb on + strand at 602.839 kb on + strand at 602.839 kb on + strand at 602.855 kb on - strand at 602.967 kb on + strand at 602.968 kb on - strand at 602.968 kb on - strand at 602.973 kb on + strand at 602.974 kb on - strand at 602.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 599,726 + AO356_02735 0.44 +0.1 599,727 - AO356_02735 0.44 -1.0 599,747 + AO356_02735 0.46 -0.9 599,790 - AO356_02735 0.50 +0.3 600,368 - -0.2 600,508 + -0.8 600,509 - -0.1 600,784 + AO356_02740 0.27 -0.1 600,832 + AO356_02740 0.29 +0.1 600,832 + AO356_02740 0.29 +0.7 600,833 - AO356_02740 0.29 +0.1 600,833 - AO356_02740 0.29 +0.3 600,918 - AO356_02740 0.35 +0.4 601,426 + AO356_02740 0.65 +1.2 601,546 + AO356_02740 0.73 -0.6 601,546 + AO356_02740 0.73 +0.6 601,546 + AO356_02740 0.73 -0.5 601,702 + AO356_02740 0.82 -0.2 601,702 + AO356_02740 0.82 +1.1 601,702 + AO356_02740 0.82 -0.8 601,702 + AO356_02740 0.82 -0.1 601,703 - AO356_02740 0.82 -0.5 601,703 - AO356_02740 0.82 +1.2 601,708 + AO356_02740 0.82 +0.7 601,907 + -0.7 601,907 + +1.1 601,908 - +0.5 601,909 + +0.3 601,909 + +0.9 601,910 - +2.0 601,910 - -1.8 602,021 + -1.7 602,022 - -0.5 602,152 + AO356_02745 0.20 -0.2 602,290 - AO356_02745 0.39 +2.2 602,360 + AO356_02745 0.48 +0.5 602,393 + AO356_02745 0.53 +0.5 602,393 + AO356_02745 0.53 -1.6 602,393 + AO356_02745 0.53 -1.0 602,394 - AO356_02745 0.53 +0.5 602,394 - AO356_02745 0.53 +0.1 602,503 - AO356_02745 0.67 -0.1 602,839 + -0.1 602,839 + -1.0 602,839 + -0.4 602,855 - +0.4 602,967 + +1.5 602,968 - +0.4 602,968 - +0.8 602,973 + -0.2 602,974 - -0.9 602,974 - +0.4
Or see this region's nucleotide sequence