Experiment: Ceftazidime 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01795 and AO356_01800 are separated by 26 nucleotides AO356_01800 and AO356_01805 are separated by 140 nucleotides AO356_01805 and AO356_01810 overlap by 4 nucleotides
AO356_01795: AO356_01795 - hypothetical protein, at 402,535 to 403,284
_01795
AO356_01800: AO356_01800 - hypothetical protein, at 403,311 to 403,562
_01800
AO356_01805: AO356_01805 - LysR family transcriptional regulator, at 403,703 to 404,599
_01805
AO356_01810: AO356_01810 - MFS transporter, at 404,596 to 405,756
_01810
Position (kb) 403
404
405 Strain fitness (log2 ratio) -2
-1
0
1 at 403.154 kb on - strand, within AO356_01795 at 403.204 kb on + strand, within AO356_01795 at 403.205 kb on - strand, within AO356_01795 at 403.271 kb on - strand at 403.277 kb on + strand at 403.278 kb on - strand at 403.278 kb on - strand at 403.278 kb on - strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.312 kb on + strand at 403.555 kb on + strand at 403.555 kb on + strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.556 kb on - strand at 403.586 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.628 kb on + strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.629 kb on - strand at 403.713 kb on - strand at 403.713 kb on - strand at 403.727 kb on + strand at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.832 kb on + strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.833 kb on - strand, within AO356_01805 at 403.834 kb on + strand, within AO356_01805 at 403.835 kb on - strand, within AO356_01805 at 403.905 kb on - strand, within AO356_01805 at 404.025 kb on - strand, within AO356_01805 at 404.466 kb on - strand, within AO356_01805 at 404.472 kb on + strand, within AO356_01805 at 404.472 kb on + strand, within AO356_01805 at 404.513 kb on + strand at 404.513 kb on + strand at 404.514 kb on - strand at 404.597 kb on + strand at 404.598 kb on - strand at 404.598 kb on - strand at 404.598 kb on - strand at 405.007 kb on + strand, within AO356_01810 at 405.092 kb on + strand, within AO356_01810 at 405.092 kb on + strand, within AO356_01810 at 405.092 kb on + strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.093 kb on - strand, within AO356_01810 at 405.098 kb on + strand, within AO356_01810 at 405.098 kb on + strand, within AO356_01810 at 405.098 kb on + strand, within AO356_01810 at 405.099 kb on - strand, within AO356_01810 at 405.227 kb on + strand, within AO356_01810 at 405.228 kb on - strand, within AO356_01810 at 405.231 kb on + strand, within AO356_01810 at 405.231 kb on + strand, within AO356_01810 at 405.231 kb on + strand, within AO356_01810 at 405.232 kb on - strand, within AO356_01810 at 405.232 kb on - strand, within AO356_01810
Per-strain Table
Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml remove 403,154 - AO356_01795 0.83 +1.0 403,204 + AO356_01795 0.89 -0.7 403,205 - AO356_01795 0.89 +0.6 403,271 - +0.6 403,277 + -0.0 403,278 - +0.3 403,278 - +0.6 403,278 - +0.6 403,312 + +0.3 403,312 + +0.7 403,312 + +0.7 403,312 + -0.0 403,555 + -2.0 403,555 + +0.3 403,556 - +1.0 403,556 - +1.1 403,556 - -0.2 403,556 - +0.7 403,556 - -0.4 403,556 - -1.0 403,586 + +0.7 403,628 + +0.4 403,628 + -1.2 403,628 + -0.5 403,628 + +0.1 403,628 + +0.1 403,628 + +0.3 403,628 + +0.9 403,628 + +0.3 403,628 + +0.1 403,628 + +0.4 403,628 + -0.0 403,628 + -0.8 403,628 + +0.1 403,629 - +0.5 403,629 - -0.3 403,629 - -1.2 403,629 - +0.4 403,713 - +0.1 403,713 - -0.5 403,727 + +0.5 403,832 + AO356_01805 0.14 -0.6 403,832 + AO356_01805 0.14 +0.7 403,832 + AO356_01805 0.14 +0.2 403,832 + AO356_01805 0.14 -0.2 403,832 + AO356_01805 0.14 +0.3 403,832 + AO356_01805 0.14 -0.2 403,832 + AO356_01805 0.14 -0.9 403,832 + AO356_01805 0.14 -0.1 403,833 - AO356_01805 0.14 +1.2 403,833 - AO356_01805 0.14 +0.3 403,833 - AO356_01805 0.14 +0.6 403,833 - AO356_01805 0.14 -0.7 403,833 - AO356_01805 0.14 +0.2 403,834 + AO356_01805 0.15 +0.1 403,835 - AO356_01805 0.15 +0.6 403,905 - AO356_01805 0.23 +0.8 404,025 - AO356_01805 0.36 +0.4 404,466 - AO356_01805 0.85 -0.3 404,472 + AO356_01805 0.86 +0.9 404,472 + AO356_01805 0.86 +0.4 404,513 + +0.1 404,513 + +0.2 404,514 - +0.1 404,597 + +0.6 404,598 - +1.2 404,598 - +0.2 404,598 - +0.6 405,007 + AO356_01810 0.35 -0.8 405,092 + AO356_01810 0.43 -0.0 405,092 + AO356_01810 0.43 +0.5 405,092 + AO356_01810 0.43 +0.1 405,093 - AO356_01810 0.43 +0.4 405,093 - AO356_01810 0.43 +0.7 405,093 - AO356_01810 0.43 +1.4 405,093 - AO356_01810 0.43 +0.8 405,093 - AO356_01810 0.43 -0.1 405,093 - AO356_01810 0.43 +0.9 405,098 + AO356_01810 0.43 +0.4 405,098 + AO356_01810 0.43 +0.3 405,098 + AO356_01810 0.43 -0.1 405,099 - AO356_01810 0.43 +0.6 405,227 + AO356_01810 0.54 +0.4 405,228 - AO356_01810 0.54 +0.1 405,231 + AO356_01810 0.55 -0.4 405,231 + AO356_01810 0.55 +1.2 405,231 + AO356_01810 0.55 -1.0 405,232 - AO356_01810 0.55 +1.6 405,232 - AO356_01810 0.55 +0.3
Or see this region's nucleotide sequence