Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01555

Experiment: Ceftazidime 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01550 and AO356_01555 are separated by 233 nucleotidesAO356_01555 and AO356_01560 are separated by 189 nucleotides AO356_01550: AO356_01550 - oxaloacetate decarboxylase, at 348,931 to 349,800 _01550 AO356_01555: AO356_01555 - acyl-CoA dehydrogenase, at 350,034 to 351,263 _01555 AO356_01560: AO356_01560 - LysR family transcriptional regulator, at 351,453 to 352,382 _01560 Position (kb) 350 351 352Strain fitness (log2 ratio) -2 -1 0 1 2at 349.061 kb on + strand, within AO356_01550at 349.061 kb on + strand, within AO356_01550at 349.061 kb on + strand, within AO356_01550at 349.061 kb on + strand, within AO356_01550at 349.062 kb on - strand, within AO356_01550at 349.062 kb on - strand, within AO356_01550at 349.062 kb on - strand, within AO356_01550at 349.065 kb on + strand, within AO356_01550at 349.065 kb on + strand, within AO356_01550at 349.065 kb on + strand, within AO356_01550at 349.065 kb on + strand, within AO356_01550at 349.097 kb on + strand, within AO356_01550at 349.097 kb on + strand, within AO356_01550at 349.098 kb on - strand, within AO356_01550at 349.098 kb on - strand, within AO356_01550at 349.459 kb on + strand, within AO356_01550at 349.459 kb on + strand, within AO356_01550at 349.460 kb on - strand, within AO356_01550at 349.460 kb on - strand, within AO356_01550at 349.460 kb on - strand, within AO356_01550at 349.460 kb on - strand, within AO356_01550at 349.460 kb on - strand, within AO356_01550at 349.565 kb on - strand, within AO356_01550at 349.642 kb on + strand, within AO356_01550at 349.643 kb on - strand, within AO356_01550at 349.643 kb on - strand, within AO356_01550at 349.666 kb on + strand, within AO356_01550at 349.666 kb on + strand, within AO356_01550at 349.667 kb on - strand, within AO356_01550at 349.667 kb on - strand, within AO356_01550at 349.667 kb on - strand, within AO356_01550at 349.741 kb on + strandat 349.741 kb on + strandat 349.741 kb on + strandat 349.742 kb on - strandat 349.742 kb on - strandat 349.742 kb on - strandat 349.742 kb on - strandat 349.759 kb on + strandat 349.759 kb on + strandat 349.759 kb on + strandat 349.759 kb on + strandat 349.759 kb on + strandat 349.760 kb on - strandat 349.760 kb on - strandat 349.780 kb on + strandat 349.780 kb on + strandat 349.781 kb on - strandat 349.781 kb on - strandat 349.798 kb on + strandat 349.799 kb on - strandat 349.872 kb on + strandat 350.068 kb on + strandat 350.068 kb on + strandat 350.068 kb on + strandat 350.068 kb on + strandat 350.068 kb on + strandat 350.068 kb on + strandat 350.068 kb on + strandat 350.069 kb on - strandat 350.069 kb on - strandat 350.133 kb on + strandat 350.134 kb on - strandat 350.152 kb on + strandat 350.152 kb on + strandat 350.152 kb on + strandat 350.152 kb on + strandat 350.152 kb on + strandat 350.152 kb on + strandat 350.153 kb on - strandat 350.153 kb on - strandat 350.153 kb on - strandat 350.153 kb on - strandat 350.158 kb on + strand, within AO356_01555at 350.158 kb on + strand, within AO356_01555at 350.158 kb on + strand, within AO356_01555at 350.158 kb on + strand, within AO356_01555at 350.158 kb on + strand, within AO356_01555at 350.159 kb on - strand, within AO356_01555at 350.159 kb on - strand, within AO356_01555at 350.159 kb on - strand, within AO356_01555at 350.159 kb on - strand, within AO356_01555at 350.159 kb on - strand, within AO356_01555at 350.159 kb on - strand, within AO356_01555at 350.159 kb on - strand, within AO356_01555at 350.159 kb on - strand, within AO356_01555at 350.282 kb on + strand, within AO356_01555at 350.283 kb on - strand, within AO356_01555at 350.305 kb on + strand, within AO356_01555at 350.305 kb on + strand, within AO356_01555at 350.306 kb on - strand, within AO356_01555at 350.306 kb on - strand, within AO356_01555at 350.306 kb on - strand, within AO356_01555at 350.306 kb on - strand, within AO356_01555at 350.366 kb on + strand, within AO356_01555at 350.366 kb on + strand, within AO356_01555at 350.366 kb on + strand, within AO356_01555at 350.514 kb on + strand, within AO356_01555at 350.514 kb on + strand, within AO356_01555at 350.515 kb on - strand, within AO356_01555at 350.541 kb on + strand, within AO356_01555at 351.031 kb on + strand, within AO356_01555at 351.031 kb on + strand, within AO356_01555at 351.032 kb on - strand, within AO356_01555at 351.196 kb on + strandat 351.196 kb on + strandat 351.196 kb on + strandat 351.196 kb on + strandat 351.197 kb on - strandat 351.197 kb on - strandat 351.197 kb on - strandat 351.251 kb on - strandat 351.293 kb on + strandat 351.293 kb on + strandat 351.293 kb on + strandat 351.294 kb on - strandat 351.294 kb on - strandat 351.312 kb on + strandat 351.312 kb on + strandat 351.312 kb on + strandat 351.313 kb on - strandat 351.313 kb on - strandat 351.313 kb on - strandat 351.335 kb on + strandat 351.340 kb on + strandat 351.354 kb on - strandat 351.356 kb on + strandat 351.374 kb on + strandat 351.375 kb on - strandat 351.375 kb on - strandat 351.420 kb on + strandat 351.421 kb on - strandat 351.421 kb on - strandat 351.421 kb on - strandat 351.439 kb on - strandat 351.439 kb on - strandat 351.505 kb on - strandat 351.747 kb on + strand, within AO356_01560at 351.747 kb on + strand, within AO356_01560at 351.747 kb on + strand, within AO356_01560at 351.748 kb on - strand, within AO356_01560at 351.963 kb on + strand, within AO356_01560at 351.964 kb on - strand, within AO356_01560at 352.026 kb on + strand, within AO356_01560at 352.027 kb on - strand, within AO356_01560at 352.027 kb on - strand, within AO356_01560at 352.140 kb on + strand, within AO356_01560at 352.140 kb on + strand, within AO356_01560at 352.140 kb on + strand, within AO356_01560at 352.140 kb on + strand, within AO356_01560at 352.140 kb on + strand, within AO356_01560at 352.141 kb on - strand, within AO356_01560at 352.141 kb on - strand, within AO356_01560

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml
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349,061 + AO356_01550 0.15 -0.0
349,061 + AO356_01550 0.15 -0.3
349,061 + AO356_01550 0.15 +0.3
349,061 + AO356_01550 0.15 +0.8
349,062 - AO356_01550 0.15 +0.9
349,062 - AO356_01550 0.15 -0.7
349,062 - AO356_01550 0.15 +1.2
349,065 + AO356_01550 0.15 +0.1
349,065 + AO356_01550 0.15 -0.9
349,065 + AO356_01550 0.15 +0.2
349,065 + AO356_01550 0.15 -1.8
349,097 + AO356_01550 0.19 -0.3
349,097 + AO356_01550 0.19 -0.0
349,098 - AO356_01550 0.19 +0.3
349,098 - AO356_01550 0.19 -1.0
349,459 + AO356_01550 0.61 +0.9
349,459 + AO356_01550 0.61 +0.1
349,460 - AO356_01550 0.61 +0.2
349,460 - AO356_01550 0.61 -0.9
349,460 - AO356_01550 0.61 +0.7
349,460 - AO356_01550 0.61 -0.1
349,460 - AO356_01550 0.61 -0.0
349,565 - AO356_01550 0.73 +0.8
349,642 + AO356_01550 0.82 +0.6
349,643 - AO356_01550 0.82 +0.3
349,643 - AO356_01550 0.82 -0.8
349,666 + AO356_01550 0.84 -0.4
349,666 + AO356_01550 0.84 +0.4
349,667 - AO356_01550 0.85 +1.7
349,667 - AO356_01550 0.85 +0.1
349,667 - AO356_01550 0.85 -0.0
349,741 + -0.1
349,741 + -0.1
349,741 + -0.6
349,742 - +0.1
349,742 - +0.4
349,742 - +0.8
349,742 - -0.0
349,759 + -1.0
349,759 + -0.4
349,759 + -0.4
349,759 + +0.4
349,759 + +0.2
349,760 - +1.3
349,760 - +0.1
349,780 + -0.8
349,780 + +0.5
349,781 - -0.4
349,781 - -0.7
349,798 + +1.0
349,799 - -0.5
349,872 + -0.4
350,068 + -0.6
350,068 + +0.2
350,068 + +0.1
350,068 + +0.2
350,068 + +0.3
350,068 + +0.5
350,068 + +0.9
350,069 - -0.3
350,069 - +0.4
350,133 + +1.3
350,134 - +0.5
350,152 + -0.9
350,152 + -0.1
350,152 + +0.4
350,152 + +0.8
350,152 + +1.0
350,152 + -0.2
350,153 - -1.3
350,153 - +0.4
350,153 - +0.5
350,153 - +0.3
350,158 + AO356_01555 0.10 -0.5
350,158 + AO356_01555 0.10 +1.1
350,158 + AO356_01555 0.10 +0.7
350,158 + AO356_01555 0.10 -1.5
350,158 + AO356_01555 0.10 +0.7
350,159 - AO356_01555 0.10 +1.2
350,159 - AO356_01555 0.10 +1.5
350,159 - AO356_01555 0.10 -0.2
350,159 - AO356_01555 0.10 -0.9
350,159 - AO356_01555 0.10 +0.1
350,159 - AO356_01555 0.10 +0.3
350,159 - AO356_01555 0.10 +0.5
350,159 - AO356_01555 0.10 +0.4
350,282 + AO356_01555 0.20 -0.2
350,283 - AO356_01555 0.20 +0.5
350,305 + AO356_01555 0.22 +2.3
350,305 + AO356_01555 0.22 -0.6
350,306 - AO356_01555 0.22 -0.4
350,306 - AO356_01555 0.22 +2.1
350,306 - AO356_01555 0.22 -0.0
350,306 - AO356_01555 0.22 -0.2
350,366 + AO356_01555 0.27 -0.9
350,366 + AO356_01555 0.27 -0.3
350,366 + AO356_01555 0.27 -1.6
350,514 + AO356_01555 0.39 +0.4
350,514 + AO356_01555 0.39 -2.3
350,515 - AO356_01555 0.39 +0.1
350,541 + AO356_01555 0.41 -0.9
351,031 + AO356_01555 0.81 +1.6
351,031 + AO356_01555 0.81 +0.4
351,032 - AO356_01555 0.81 -0.7
351,196 + +0.4
351,196 + +0.5
351,196 + +0.3
351,196 + +1.4
351,197 - +0.9
351,197 - +0.1
351,197 - +0.7
351,251 - -1.8
351,293 + +0.5
351,293 + +0.3
351,293 + +0.4
351,294 - -0.3
351,294 - -0.8
351,312 + +0.1
351,312 + -0.2
351,312 + -1.0
351,313 - -0.3
351,313 - +0.5
351,313 - +0.4
351,335 + -0.0
351,340 + -0.0
351,354 - +0.4
351,356 + +1.0
351,374 + -0.5
351,375 - +0.8
351,375 - +1.1
351,420 + +0.5
351,421 - +1.3
351,421 - -0.2
351,421 - -1.0
351,439 - -0.3
351,439 - -0.2
351,505 - +1.1
351,747 + AO356_01560 0.32 -0.0
351,747 + AO356_01560 0.32 +0.1
351,747 + AO356_01560 0.32 +0.6
351,748 - AO356_01560 0.32 +0.3
351,963 + AO356_01560 0.55 -1.1
351,964 - AO356_01560 0.55 -0.5
352,026 + AO356_01560 0.62 +0.5
352,027 - AO356_01560 0.62 +0.3
352,027 - AO356_01560 0.62 +0.2
352,140 + AO356_01560 0.74 -0.0
352,140 + AO356_01560 0.74 -0.1
352,140 + AO356_01560 0.74 -1.0
352,140 + AO356_01560 0.74 +0.2
352,140 + AO356_01560 0.74 +1.2
352,141 - AO356_01560 0.74 +0.2
352,141 - AO356_01560 0.74 +0.1

Or see this region's nucleotide sequence