Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01300

Experiment: Ceftazidime 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01295 and AO356_01300 are separated by 187 nucleotidesAO356_01300 and AO356_01305 are separated by 270 nucleotides AO356_01295: AO356_01295 - class C beta-lactamase, at 300,909 to 302,057 _01295 AO356_01300: AO356_01300 - tyrosyl-trna synthetase, at 302,245 to 302,793 _01300 AO356_01305: AO356_01305 - hypothetical protein, at 303,064 to 303,849 _01305 Position (kb) 302 303Strain fitness (log2 ratio) -3 -2 -1 0 1at 301.299 kb on + strand, within AO356_01295at 301.365 kb on + strand, within AO356_01295at 301.365 kb on + strand, within AO356_01295at 301.366 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.413 kb on + strand, within AO356_01295at 301.414 kb on - strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.734 kb on - strand, within AO356_01295at 301.743 kb on + strand, within AO356_01295at 301.743 kb on + strand, within AO356_01295at 301.744 kb on - strand, within AO356_01295at 301.744 kb on - strand, within AO356_01295at 301.785 kb on + strand, within AO356_01295at 301.785 kb on + strand, within AO356_01295at 301.786 kb on - strand, within AO356_01295at 301.938 kb on + strand, within AO356_01295at 301.939 kb on - strand, within AO356_01295at 301.995 kb on + strandat 301.995 kb on + strandat 301.996 kb on - strandat 301.996 kb on - strandat 301.996 kb on - strandat 302.055 kb on + strandat 302.055 kb on + strandat 302.073 kb on + strandat 302.074 kb on - strandat 302.217 kb on + strandat 302.562 kb on + strand, within AO356_01300at 302.576 kb on + strand, within AO356_01300at 302.576 kb on + strand, within AO356_01300at 302.577 kb on - strand, within AO356_01300at 302.577 kb on - strand, within AO356_01300at 302.577 kb on - strand, within AO356_01300at 302.664 kb on + strand, within AO356_01300at 302.766 kb on + strandat 302.810 kb on + strandat 302.811 kb on - strandat 302.811 kb on - strandat 302.814 kb on + strandat 302.814 kb on + strandat 302.814 kb on + strandat 302.814 kb on + strandat 302.815 kb on - strandat 302.815 kb on - strandat 302.815 kb on - strandat 302.815 kb on - strandat 302.815 kb on - strandat 302.815 kb on - strandat 302.821 kb on + strandat 302.822 kb on - strandat 302.865 kb on + strandat 302.891 kb on - strandat 303.136 kb on - strandat 303.136 kb on - strandat 303.161 kb on + strand, within AO356_01305at 303.161 kb on + strand, within AO356_01305at 303.161 kb on + strand, within AO356_01305at 303.161 kb on + strand, within AO356_01305at 303.161 kb on + strand, within AO356_01305at 303.162 kb on - strand, within AO356_01305at 303.162 kb on - strand, within AO356_01305at 303.162 kb on - strand, within AO356_01305at 303.162 kb on - strand, within AO356_01305at 303.162 kb on - strand, within AO356_01305at 303.311 kb on + strand, within AO356_01305at 303.434 kb on + strand, within AO356_01305at 303.434 kb on + strand, within AO356_01305at 303.434 kb on + strand, within AO356_01305at 303.435 kb on - strand, within AO356_01305at 303.435 kb on - strand, within AO356_01305at 303.435 kb on - strand, within AO356_01305at 303.435 kb on - strand, within AO356_01305at 303.687 kb on + strand, within AO356_01305at 303.698 kb on + strand, within AO356_01305

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml
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301,299 + AO356_01295 0.34 -1.4
301,365 + AO356_01295 0.40 -0.4
301,365 + AO356_01295 0.40 -0.3
301,366 - AO356_01295 0.40 -0.7
301,369 - AO356_01295 0.40 -0.8
301,369 - AO356_01295 0.40 -0.3
301,369 - AO356_01295 0.40 -0.8
301,369 - AO356_01295 0.40 -1.6
301,369 - AO356_01295 0.40 -1.4
301,413 + AO356_01295 0.44 -1.0
301,414 - AO356_01295 0.44 -1.2
301,527 + AO356_01295 0.54 -1.5
301,527 + AO356_01295 0.54 -1.0
301,527 + AO356_01295 0.54 -0.8
301,527 + AO356_01295 0.54 +0.2
301,527 + AO356_01295 0.54 -0.2
301,527 + AO356_01295 0.54 -1.9
301,527 + AO356_01295 0.54 -1.2
301,527 + AO356_01295 0.54 -0.3
301,527 + AO356_01295 0.54 -1.0
301,527 + AO356_01295 0.54 -1.9
301,527 + AO356_01295 0.54 -0.6
301,527 + AO356_01295 0.54 -1.1
301,528 - AO356_01295 0.54 -0.2
301,528 - AO356_01295 0.54 -0.9
301,528 - AO356_01295 0.54 -1.9
301,528 - AO356_01295 0.54 -0.0
301,528 - AO356_01295 0.54 -1.5
301,528 - AO356_01295 0.54 -1.7
301,528 - AO356_01295 0.54 -0.5
301,528 - AO356_01295 0.54 -1.9
301,528 - AO356_01295 0.54 -1.0
301,528 - AO356_01295 0.54 -0.0
301,734 - AO356_01295 0.72 -3.3
301,743 + AO356_01295 0.73 -1.0
301,743 + AO356_01295 0.73 -0.9
301,744 - AO356_01295 0.73 -1.9
301,744 - AO356_01295 0.73 -1.4
301,785 + AO356_01295 0.76 -1.7
301,785 + AO356_01295 0.76 +0.1
301,786 - AO356_01295 0.76 -1.9
301,938 + AO356_01295 0.90 -1.3
301,939 - AO356_01295 0.90 +0.6
301,995 + -0.0
301,995 + -0.2
301,996 - -0.0
301,996 - -0.3
301,996 - -0.5
302,055 + +0.1
302,055 + -0.4
302,073 + +0.5
302,074 - -0.3
302,217 + +0.3
302,562 + AO356_01300 0.58 +1.3
302,576 + AO356_01300 0.60 -0.0
302,576 + AO356_01300 0.60 +0.6
302,577 - AO356_01300 0.60 -1.4
302,577 - AO356_01300 0.60 +0.2
302,577 - AO356_01300 0.60 -0.1
302,664 + AO356_01300 0.76 -0.4
302,766 + -0.7
302,810 + -0.5
302,811 - -0.2
302,811 - +0.7
302,814 + -0.1
302,814 + +1.1
302,814 + +0.8
302,814 + -0.5
302,815 - -0.9
302,815 - -0.1
302,815 - -0.3
302,815 - -0.5
302,815 - -0.0
302,815 - -0.5
302,821 + +0.2
302,822 - -1.3
302,865 + -0.9
302,891 - -0.9
303,136 - -0.2
303,136 - -0.1
303,161 + AO356_01305 0.12 +1.0
303,161 + AO356_01305 0.12 +0.4
303,161 + AO356_01305 0.12 -0.6
303,161 + AO356_01305 0.12 +0.1
303,161 + AO356_01305 0.12 +0.1
303,162 - AO356_01305 0.12 -1.9
303,162 - AO356_01305 0.12 +0.4
303,162 - AO356_01305 0.12 +0.9
303,162 - AO356_01305 0.12 -1.5
303,162 - AO356_01305 0.12 -0.5
303,311 + AO356_01305 0.31 -0.4
303,434 + AO356_01305 0.47 +0.2
303,434 + AO356_01305 0.47 +0.1
303,434 + AO356_01305 0.47 +0.6
303,435 - AO356_01305 0.47 -0.9
303,435 - AO356_01305 0.47 -0.2
303,435 - AO356_01305 0.47 -0.1
303,435 - AO356_01305 0.47 +0.5
303,687 + AO356_01305 0.79 -0.1
303,698 + AO356_01305 0.81 +0.8

Or see this region's nucleotide sequence