Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01290

Experiment: Ceftazidime 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01280 and AO356_01285 are separated by 135 nucleotidesAO356_01285 and AO356_01290 are separated by 78 nucleotidesAO356_01290 and AO356_01295 are separated by 228 nucleotides AO356_01280: AO356_01280 - hypothetical protein, at 298,419 to 298,841 _01280 AO356_01285: AO356_01285 - oxidoreductase, at 298,977 to 299,723 _01285 AO356_01290: AO356_01290 - peroxidase, at 299,802 to 300,680 _01290 AO356_01295: AO356_01295 - class C beta-lactamase, at 300,909 to 302,057 _01295 Position (kb) 299 300 301Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 298.808 kb on - strandat 298.824 kb on + strandat 298.824 kb on + strandat 298.824 kb on + strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.825 kb on - strandat 298.878 kb on - strandat 298.909 kb on + strandat 299.045 kb on + strandat 299.046 kb on - strandat 299.152 kb on + strand, within AO356_01285at 299.152 kb on + strand, within AO356_01285at 299.152 kb on + strand, within AO356_01285at 299.153 kb on - strand, within AO356_01285at 299.153 kb on - strand, within AO356_01285at 299.153 kb on - strand, within AO356_01285at 299.158 kb on + strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.159 kb on - strand, within AO356_01285at 299.263 kb on + strand, within AO356_01285at 299.264 kb on - strand, within AO356_01285at 299.399 kb on + strand, within AO356_01285at 299.399 kb on + strand, within AO356_01285at 299.399 kb on + strand, within AO356_01285at 299.400 kb on - strand, within AO356_01285at 299.465 kb on + strand, within AO356_01285at 299.466 kb on - strand, within AO356_01285at 299.466 kb on - strand, within AO356_01285at 299.626 kb on + strand, within AO356_01285at 299.627 kb on - strand, within AO356_01285at 299.858 kb on - strandat 299.858 kb on - strandat 299.858 kb on - strandat 300.671 kb on - strandat 300.671 kb on - strandat 300.673 kb on + strandat 300.673 kb on + strandat 300.673 kb on + strandat 300.674 kb on - strandat 300.674 kb on - strandat 300.674 kb on - strandat 300.693 kb on - strandat 300.693 kb on - strandat 300.693 kb on - strandat 300.793 kb on + strandat 300.794 kb on - strandat 300.834 kb on - strandat 300.967 kb on + strandat 301.065 kb on + strand, within AO356_01295at 301.065 kb on + strand, within AO356_01295at 301.065 kb on + strand, within AO356_01295at 301.065 kb on + strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.066 kb on - strand, within AO356_01295at 301.083 kb on + strand, within AO356_01295at 301.084 kb on - strand, within AO356_01295at 301.093 kb on - strand, within AO356_01295at 301.191 kb on + strand, within AO356_01295at 301.299 kb on + strand, within AO356_01295at 301.365 kb on + strand, within AO356_01295at 301.365 kb on + strand, within AO356_01295at 301.366 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.369 kb on - strand, within AO356_01295at 301.413 kb on + strand, within AO356_01295at 301.414 kb on - strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.527 kb on + strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295at 301.528 kb on - strand, within AO356_01295

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml
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298,808 - -0.2
298,824 + +0.7
298,824 + +0.3
298,824 + +0.2
298,825 - +0.5
298,825 - +0.6
298,825 - +0.3
298,825 - +1.2
298,825 - -0.2
298,878 - -0.4
298,909 + +0.4
299,045 + -0.2
299,046 - -0.6
299,152 + AO356_01285 0.23 -0.6
299,152 + AO356_01285 0.23 -0.7
299,152 + AO356_01285 0.23 +0.2
299,153 - AO356_01285 0.24 +0.0
299,153 - AO356_01285 0.24 +1.2
299,153 - AO356_01285 0.24 -0.5
299,158 + AO356_01285 0.24 +0.7
299,159 - AO356_01285 0.24 +0.0
299,159 - AO356_01285 0.24 -0.3
299,159 - AO356_01285 0.24 -0.3
299,159 - AO356_01285 0.24 +0.8
299,159 - AO356_01285 0.24 -0.4
299,263 + AO356_01285 0.38 -1.5
299,264 - AO356_01285 0.38 +0.6
299,399 + AO356_01285 0.56 -0.7
299,399 + AO356_01285 0.56 +0.2
299,399 + AO356_01285 0.56 +0.2
299,400 - AO356_01285 0.57 +1.3
299,465 + AO356_01285 0.65 +0.3
299,466 - AO356_01285 0.65 -0.1
299,466 - AO356_01285 0.65 -0.3
299,626 + AO356_01285 0.87 +0.1
299,627 - AO356_01285 0.87 +0.7
299,858 - -1.5
299,858 - +0.5
299,858 - -0.0
300,671 - -0.3
300,671 - +1.0
300,673 + +1.7
300,673 + +4.0
300,673 + +4.9
300,674 - -0.7
300,674 - -1.0
300,674 - -0.6
300,693 - +0.3
300,693 - -1.4
300,693 - +0.3
300,793 + +6.5
300,794 - -0.7
300,834 - -1.3
300,967 + +0.3
301,065 + AO356_01295 0.14 -1.8
301,065 + AO356_01295 0.14 -1.5
301,065 + AO356_01295 0.14 -2.4
301,065 + AO356_01295 0.14 -1.9
301,066 - AO356_01295 0.14 -0.3
301,066 - AO356_01295 0.14 -1.9
301,066 - AO356_01295 0.14 -0.6
301,066 - AO356_01295 0.14 -1.6
301,066 - AO356_01295 0.14 -3.5
301,066 - AO356_01295 0.14 -1.7
301,066 - AO356_01295 0.14 +0.9
301,066 - AO356_01295 0.14 -1.2
301,083 + AO356_01295 0.15 -1.0
301,084 - AO356_01295 0.15 -1.5
301,093 - AO356_01295 0.16 -1.2
301,191 + AO356_01295 0.25 -2.0
301,299 + AO356_01295 0.34 -1.4
301,365 + AO356_01295 0.40 -0.4
301,365 + AO356_01295 0.40 -0.3
301,366 - AO356_01295 0.40 -0.7
301,369 - AO356_01295 0.40 -0.8
301,369 - AO356_01295 0.40 -0.3
301,369 - AO356_01295 0.40 -0.8
301,369 - AO356_01295 0.40 -1.6
301,369 - AO356_01295 0.40 -1.4
301,413 + AO356_01295 0.44 -1.0
301,414 - AO356_01295 0.44 -1.2
301,527 + AO356_01295 0.54 -1.5
301,527 + AO356_01295 0.54 -1.0
301,527 + AO356_01295 0.54 -0.8
301,527 + AO356_01295 0.54 +0.2
301,527 + AO356_01295 0.54 -0.2
301,527 + AO356_01295 0.54 -1.9
301,527 + AO356_01295 0.54 -1.2
301,527 + AO356_01295 0.54 -0.3
301,527 + AO356_01295 0.54 -1.0
301,527 + AO356_01295 0.54 -1.9
301,527 + AO356_01295 0.54 -0.6
301,527 + AO356_01295 0.54 -1.1
301,528 - AO356_01295 0.54 -0.2
301,528 - AO356_01295 0.54 -0.9
301,528 - AO356_01295 0.54 -1.9
301,528 - AO356_01295 0.54 -0.0
301,528 - AO356_01295 0.54 -1.5
301,528 - AO356_01295 0.54 -1.7
301,528 - AO356_01295 0.54 -0.5
301,528 - AO356_01295 0.54 -1.9
301,528 - AO356_01295 0.54 -1.0
301,528 - AO356_01295 0.54 -0.0

Or see this region's nucleotide sequence