Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00300

Experiment: Ceftazidime 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00290 and AO356_00295 are separated by 132 nucleotidesAO356_00295 and AO356_00300 are separated by 229 nucleotidesAO356_00300 and AO356_00305 are separated by 494 nucleotides AO356_00290: AO356_00290 - DNA primase, at 52,921 to 53,883 _00290 AO356_00295: AO356_00295 - hypothetical protein, at 54,016 to 54,210 _00295 AO356_00300: AO356_00300 - relaxase, at 54,440 to 56,164 _00300 AO356_00305: AO356_00305 - hypothetical protein, at 56,659 to 57,279 _00305 Position (kb) 54 55 56 57Strain fitness (log2 ratio) -2 -1 0 1 2 3at 53.442 kb on + strand, within AO356_00290at 53.442 kb on + strand, within AO356_00290at 53.537 kb on - strand, within AO356_00290at 53.539 kb on + strand, within AO356_00290at 53.539 kb on + strand, within AO356_00290at 53.540 kb on - strand, within AO356_00290at 53.638 kb on + strand, within AO356_00290at 53.682 kb on - strand, within AO356_00290at 53.689 kb on + strand, within AO356_00290at 53.690 kb on - strand, within AO356_00290at 53.809 kb on + strandat 54.042 kb on - strand, within AO356_00295at 54.042 kb on - strand, within AO356_00295at 54.083 kb on + strand, within AO356_00295at 54.083 kb on + strand, within AO356_00295at 54.165 kb on + strand, within AO356_00295at 54.165 kb on + strand, within AO356_00295at 54.166 kb on - strand, within AO356_00295at 54.166 kb on - strand, within AO356_00295at 54.184 kb on + strand, within AO356_00295at 54.213 kb on + strandat 54.214 kb on - strandat 54.214 kb on - strandat 54.214 kb on - strandat 54.263 kb on + strandat 54.300 kb on + strandat 54.300 kb on + strandat 54.301 kb on - strandat 54.306 kb on + strandat 54.380 kb on + strandat 54.402 kb on + strandat 54.509 kb on + strandat 54.510 kb on - strandat 54.510 kb on - strandat 54.510 kb on - strandat 54.585 kb on - strandat 54.585 kb on - strandat 54.620 kb on + strand, within AO356_00300at 54.620 kb on + strand, within AO356_00300at 54.620 kb on + strand, within AO356_00300at 54.625 kb on - strand, within AO356_00300at 54.625 kb on - strand, within AO356_00300at 54.625 kb on - strand, within AO356_00300at 54.642 kb on - strand, within AO356_00300at 54.692 kb on + strand, within AO356_00300at 54.693 kb on - strand, within AO356_00300at 54.758 kb on + strand, within AO356_00300at 54.759 kb on - strand, within AO356_00300at 54.947 kb on + strand, within AO356_00300at 54.947 kb on + strand, within AO356_00300at 54.966 kb on - strand, within AO356_00300at 54.999 kb on - strand, within AO356_00300at 54.999 kb on - strand, within AO356_00300at 54.999 kb on - strand, within AO356_00300at 55.070 kb on + strand, within AO356_00300at 55.070 kb on + strand, within AO356_00300at 55.071 kb on - strand, within AO356_00300at 55.071 kb on - strand, within AO356_00300at 55.071 kb on - strand, within AO356_00300at 55.071 kb on - strand, within AO356_00300at 55.089 kb on - strand, within AO356_00300at 55.200 kb on + strand, within AO356_00300at 55.201 kb on - strand, within AO356_00300at 55.229 kb on + strand, within AO356_00300at 55.325 kb on - strand, within AO356_00300at 55.337 kb on + strand, within AO356_00300at 55.337 kb on + strand, within AO356_00300at 55.565 kb on - strand, within AO356_00300at 55.565 kb on - strand, within AO356_00300at 55.602 kb on + strand, within AO356_00300at 55.603 kb on - strand, within AO356_00300at 55.603 kb on - strand, within AO356_00300at 55.682 kb on + strand, within AO356_00300at 55.683 kb on - strand, within AO356_00300at 55.683 kb on - strand, within AO356_00300at 55.703 kb on - strand, within AO356_00300at 55.703 kb on - strand, within AO356_00300at 55.703 kb on - strand, within AO356_00300at 55.885 kb on - strand, within AO356_00300at 55.937 kb on - strand, within AO356_00300at 55.937 kb on - strand, within AO356_00300at 56.080 kb on + strandat 56.088 kb on - strandat 56.112 kb on + strandat 56.113 kb on - strandat 56.155 kb on - strandat 56.173 kb on - strandat 56.175 kb on + strandat 56.175 kb on + strandat 56.180 kb on + strandat 56.181 kb on - strandat 56.212 kb on - strandat 56.214 kb on + strandat 56.244 kb on + strandat 56.245 kb on - strandat 56.280 kb on + strandat 56.281 kb on - strandat 56.281 kb on - strandat 56.281 kb on - strandat 56.374 kb on + strandat 56.374 kb on + strandat 56.374 kb on + strandat 56.375 kb on - strandat 56.375 kb on - strandat 56.375 kb on - strandat 56.404 kb on + strandat 56.404 kb on + strandat 56.405 kb on - strandat 56.407 kb on + strandat 56.407 kb on + strandat 56.407 kb on + strandat 56.407 kb on + strandat 56.407 kb on + strandat 56.408 kb on - strandat 56.408 kb on - strandat 56.408 kb on - strandat 56.408 kb on - strandat 56.408 kb on - strandat 56.408 kb on - strandat 56.408 kb on - strandat 56.408 kb on - strandat 56.408 kb on - strandat 56.487 kb on + strandat 56.487 kb on + strandat 56.560 kb on - strandat 56.560 kb on - strandat 56.579 kb on - strandat 56.595 kb on + strandat 56.596 kb on - strandat 56.716 kb on + strandat 56.717 kb on - strandat 56.787 kb on + strand, within AO356_00305at 56.850 kb on + strand, within AO356_00305at 56.851 kb on - strand, within AO356_00305at 56.885 kb on + strand, within AO356_00305at 56.885 kb on + strand, within AO356_00305at 56.885 kb on + strand, within AO356_00305at 56.885 kb on + strand, within AO356_00305at 56.886 kb on - strand, within AO356_00305at 56.886 kb on - strand, within AO356_00305at 56.886 kb on - strand, within AO356_00305at 56.903 kb on + strand, within AO356_00305at 56.903 kb on + strand, within AO356_00305at 56.903 kb on + strand, within AO356_00305at 56.904 kb on - strand, within AO356_00305at 56.904 kb on - strand, within AO356_00305at 56.904 kb on - strand, within AO356_00305at 56.904 kb on - strand, within AO356_00305at 56.927 kb on + strand, within AO356_00305at 56.928 kb on - strand, within AO356_00305at 56.944 kb on + strand, within AO356_00305at 56.944 kb on + strand, within AO356_00305at 56.965 kb on + strand, within AO356_00305at 56.986 kb on + strand, within AO356_00305at 56.986 kb on + strand, within AO356_00305at 56.990 kb on + strand, within AO356_00305at 56.990 kb on + strand, within AO356_00305at 56.990 kb on + strand, within AO356_00305at 56.990 kb on + strand, within AO356_00305at 56.991 kb on - strand, within AO356_00305at 56.991 kb on - strand, within AO356_00305at 56.991 kb on - strand, within AO356_00305at 56.993 kb on + strand, within AO356_00305at 56.993 kb on + strand, within AO356_00305at 56.993 kb on + strand, within AO356_00305at 56.993 kb on + strand, within AO356_00305at 56.993 kb on + strand, within AO356_00305at 56.993 kb on + strand, within AO356_00305at 56.994 kb on - strand, within AO356_00305at 56.994 kb on - strand, within AO356_00305at 56.994 kb on - strand, within AO356_00305at 56.997 kb on + strand, within AO356_00305at 57.142 kb on - strand, within AO356_00305

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Per-strain Table

Position Strand Gene LocusTag Fraction Ceftazidime 0.2 mg/ml
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53,442 + AO356_00290 0.54 +0.5
53,442 + AO356_00290 0.54 -0.3
53,537 - AO356_00290 0.64 +0.3
53,539 + AO356_00290 0.64 -0.8
53,539 + AO356_00290 0.64 +0.1
53,540 - AO356_00290 0.64 -0.7
53,638 + AO356_00290 0.74 -0.2
53,682 - AO356_00290 0.79 +0.2
53,689 + AO356_00290 0.80 -0.4
53,690 - AO356_00290 0.80 -1.5
53,809 + -0.1
54,042 - AO356_00295 0.13 -2.2
54,042 - AO356_00295 0.13 -0.9
54,083 + AO356_00295 0.34 -0.4
54,083 + AO356_00295 0.34 -1.3
54,165 + AO356_00295 0.76 -1.1
54,165 + AO356_00295 0.76 +0.1
54,166 - AO356_00295 0.77 -2.2
54,166 - AO356_00295 0.77 +0.6
54,184 + AO356_00295 0.86 +1.0
54,213 + +0.2
54,214 - +0.2
54,214 - -0.3
54,214 - +1.6
54,263 + +0.8
54,300 + +0.7
54,300 + -1.2
54,301 - -0.1
54,306 + +0.9
54,380 + +0.9
54,402 + -0.2
54,509 + +0.5
54,510 - -1.9
54,510 - -0.8
54,510 - +0.2
54,585 - -0.4
54,585 - +2.4
54,620 + AO356_00300 0.10 -0.4
54,620 + AO356_00300 0.10 -0.5
54,620 + AO356_00300 0.10 +0.6
54,625 - AO356_00300 0.11 +0.5
54,625 - AO356_00300 0.11 -0.5
54,625 - AO356_00300 0.11 +1.0
54,642 - AO356_00300 0.12 +0.5
54,692 + AO356_00300 0.15 +0.7
54,693 - AO356_00300 0.15 +0.5
54,758 + AO356_00300 0.18 -0.3
54,759 - AO356_00300 0.18 +0.5
54,947 + AO356_00300 0.29 -1.2
54,947 + AO356_00300 0.29 +1.0
54,966 - AO356_00300 0.30 +0.0
54,999 - AO356_00300 0.32 +0.5
54,999 - AO356_00300 0.32 +0.7
54,999 - AO356_00300 0.32 +0.1
55,070 + AO356_00300 0.37 -0.1
55,070 + AO356_00300 0.37 +0.5
55,071 - AO356_00300 0.37 +0.9
55,071 - AO356_00300 0.37 +0.7
55,071 - AO356_00300 0.37 +1.1
55,071 - AO356_00300 0.37 -0.3
55,089 - AO356_00300 0.38 -0.4
55,200 + AO356_00300 0.44 +0.8
55,201 - AO356_00300 0.44 +0.1
55,229 + AO356_00300 0.46 +0.1
55,325 - AO356_00300 0.51 -0.2
55,337 + AO356_00300 0.52 -0.4
55,337 + AO356_00300 0.52 +0.3
55,565 - AO356_00300 0.65 -1.2
55,565 - AO356_00300 0.65 -0.7
55,602 + AO356_00300 0.67 +0.8
55,603 - AO356_00300 0.67 +0.6
55,603 - AO356_00300 0.67 -0.1
55,682 + AO356_00300 0.72 +1.5
55,683 - AO356_00300 0.72 -1.5
55,683 - AO356_00300 0.72 -2.3
55,703 - AO356_00300 0.73 +0.8
55,703 - AO356_00300 0.73 +0.4
55,703 - AO356_00300 0.73 -0.1
55,885 - AO356_00300 0.84 +0.7
55,937 - AO356_00300 0.87 +0.1
55,937 - AO356_00300 0.87 +0.5
56,080 + +0.8
56,088 - -0.2
56,112 + -0.3
56,113 - +0.3
56,155 - -0.7
56,173 - +0.3
56,175 + -0.1
56,175 + +1.5
56,180 + +0.3
56,181 - +0.5
56,212 - -0.2
56,214 + +1.0
56,244 + -0.0
56,245 - +0.9
56,280 + +0.0
56,281 - -1.8
56,281 - -0.8
56,281 - -0.3
56,374 + +0.4
56,374 + -0.1
56,374 + +1.2
56,375 - +0.1
56,375 - +0.7
56,375 - +0.5
56,404 + +0.5
56,404 + +0.4
56,405 - -0.7
56,407 + +0.4
56,407 + -0.4
56,407 + +0.6
56,407 + +1.8
56,407 + +0.1
56,408 - +1.1
56,408 - +0.6
56,408 - -0.3
56,408 - +0.1
56,408 - -0.3
56,408 - +1.3
56,408 - -1.3
56,408 - +0.7
56,408 - -0.4
56,487 + +0.9
56,487 + +0.2
56,560 - +0.4
56,560 - +0.3
56,579 - -1.7
56,595 + +0.8
56,596 - +0.4
56,716 + -0.3
56,717 - -0.0
56,787 + AO356_00305 0.21 -0.2
56,850 + AO356_00305 0.31 -1.2
56,851 - AO356_00305 0.31 -0.5
56,885 + AO356_00305 0.36 +0.8
56,885 + AO356_00305 0.36 -0.7
56,885 + AO356_00305 0.36 +0.6
56,885 + AO356_00305 0.36 -1.4
56,886 - AO356_00305 0.37 -1.1
56,886 - AO356_00305 0.37 +0.4
56,886 - AO356_00305 0.37 +0.5
56,903 + AO356_00305 0.39 -0.2
56,903 + AO356_00305 0.39 +0.2
56,903 + AO356_00305 0.39 +0.3
56,904 - AO356_00305 0.39 +1.0
56,904 - AO356_00305 0.39 -0.3
56,904 - AO356_00305 0.39 -0.9
56,904 - AO356_00305 0.39 +0.2
56,927 + AO356_00305 0.43 -1.5
56,928 - AO356_00305 0.43 -0.7
56,944 + AO356_00305 0.46 +0.5
56,944 + AO356_00305 0.46 -0.7
56,965 + AO356_00305 0.49 +0.0
56,986 + AO356_00305 0.53 +0.2
56,986 + AO356_00305 0.53 -0.8
56,990 + AO356_00305 0.53 +2.8
56,990 + AO356_00305 0.53 +1.0
56,990 + AO356_00305 0.53 -0.5
56,990 + AO356_00305 0.53 +0.2
56,991 - AO356_00305 0.53 +0.2
56,991 - AO356_00305 0.53 -0.6
56,991 - AO356_00305 0.53 -0.6
56,993 + AO356_00305 0.54 +1.2
56,993 + AO356_00305 0.54 +0.3
56,993 + AO356_00305 0.54 +0.1
56,993 + AO356_00305 0.54 +0.6
56,993 + AO356_00305 0.54 +0.2
56,993 + AO356_00305 0.54 -0.9
56,994 - AO356_00305 0.54 +0.8
56,994 - AO356_00305 0.54 +1.2
56,994 - AO356_00305 0.54 +0.1
56,997 + AO356_00305 0.54 +0.0
57,142 - AO356_00305 0.78 +0.9

Or see this region's nucleotide sequence